CK934580

Overview
NameCK934580
Unique NameCK934580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_OENEH (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.067e-57
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAP + GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVET+FLYPWA+SFD+LGV VFIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFRISGLLAPTSIGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETIFLYPWALSFDILGVSVFIEALIFVLILVLGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_OENBI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Oenothera biennis GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.067e-57
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISSVIPILAF IS +LAP + GPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVET+FLYPWA+SFD+LGV VFIEA IF+LIL++GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSVIPILAFRISGLLAPTSIGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETIFLYPWALSFDILGVSVFIEALIFVLILVLGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_LOLPR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lolium perenne GN=ndhC PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 6.067e-57
Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFW FLII+S+IPILAF IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILAFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_ACOCL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Acorus calamus GN=ndhC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.924e-57
Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFWAFL+ISSVIPILAFLIS VLAP  +GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLLISSVIPILAFLISGVLAPTREGPEKLSSYESGIEPIGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFLEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_ACOAM (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Acorus americanus GN=ndhC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 7.924e-57
Identity = 106/120 (88.33%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFWAFL+ISSVIPILAFLIS VLAP  +GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VF+EA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWAFLLISSVIPILAFLISGVLAPTREGPEKLSSYESGIEPIGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFLEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_NYMAL (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nymphaea alba GN=ndhC PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.352e-56
Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFL+ISSVIPILAFLIS VLAPI++GPEKLSSYESGIEP+GDAW+QFRIRYYMFALVFVVFDVETVFLYPWA+SFD+LGV VFIEA IF+LI +VG VYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLMISSVIPILAFLISGVLAPISEGPEKLSSYESGIEPIGDAWIQFRIRYYMFALVFVVFDVETVFLYPWAVSFDILGVYVFIEALIFVLIPVVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_SORBI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Sorghum bicolor GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.765e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_SACOF (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Saccharum officinarum GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.765e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_SACHY (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Saccharum hybrid GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.765e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Zea mays GN=ndhC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.765e-56
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFW FLII+S+IPIL F IS +LAP+++GPEKLSSYESGIEPMG AWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LIL+VGLVYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIIASLIPILVFWISGLLAPVSEGPEKLSSYESGIEPMGGAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLILVVGLVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CK934580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_OENEH6.067e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_OENBI6.067e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_LOLPR6.067e-5787.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ACOCL7.924e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ACOAM7.924e-5788.33NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_NYMAL1.352e-5687.50NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SORBI1.765e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SACOF1.765e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_SACHY1.765e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_MAIZE1.765e-5686.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934580 ID=CK934580; Name=CK934580; organism=Citrus sinensis; type=EST; length=618bp
GGGAAATAAANNNGAAGGAAGTGTAATGAAANNNGGATTCCAATCGATAA
ATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTGCGGTTCGATC
AAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACTTGACAATGAA
TTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATTCATAGGAGTT
TGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGCATTTCTAATA
ATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGC
CCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAATCGGGTATCG
AACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTATTATATGTTT
GCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTCTTTATCCATG
GGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATAGAAGCTTTCA
TTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTGGCGAAAAGGA
GCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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