CK934597

Overview
NameCK934597
Unique NameCK934597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_ISOGA (Photosystem I reaction center subunit XI OS=Isochrysis galbana GN=psaL PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.001e-26
Identity = 58/150 (38.67%), Postives = 85/150 (56.67%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLL 896
            + ++P N DPF+G+L TP+T+S     YL NLP YR  ++PLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF +                  + L+++ GW  FT GF    + G   AY +L
Sbjct:    3 EFVKPFNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLTPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLIIILTLALTIYGLASFQDNGVG--------------ENLESSKGWRNFTSGFTIGALGGASVAYLVL 138          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_ANASP (Photosystem I reaction center subunit XI OS=Anabaena sp. (strain PCC 7120) GN=psaL PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.230e-26
Identity = 58/149 (38.93%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFL 893
            +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     N   P+    +T+      PD  Q+ +GW  F   F   GI G + AYFL
Sbjct:   19 EVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLALSLYA----NSNPPTALASVTV---PNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_MASLA (Photosystem I reaction center subunit XI OS=Mastigocladus laminosus GN=psaL PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.804e-26
Identity = 62/155 (40.00%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            +V+ P   DP IG LETPI SSPL+ W++ NLPAYR  ++   RG+EVG+AHG+ + GPF K GPLRNT              ++IL+  LT+Y     N   P     +        P+  Q+++GW  F   F   GI G + AYFL   L L
Sbjct:   19 EVVFPAYRDPQIGDLETPINSSPLVKWFIGNLPAYRPGITTFRRGLEVGMAHGYWIFGPFAKLGPLRNTVNANLAGLLSALGLIIILTGALTLYA----NSKPPKPVKSV---ATPNPPEAFQSSEGWNNFASAFLIGGIGGAVVAYFLTSNLEL 166          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_ANAVT (Photosystem I reaction center subunit XI OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaL PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.804e-26
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFL 893
            +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     N   P     +T+      PD  Q+ +GW  F   F   GI G + AYFL
Sbjct:   19 EVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLSLSLYA----NSNPPKALASVTV---PNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_SYNE7 (Photosystem I reaction center subunit XI OS=Synechococcus elongatus (strain PCC 7942) GN=psaL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.107e-25
Identity = 62/142 (43.66%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  468 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFL 893
            G P IG+L TPI SSP    +++ LP YR  +S   RG+E+G+AHGFLL GPF   GPLRNTE             VVIL++CL++YG    N G   +A   T+T     P +L T +GW++FT GF   G+ G  +A++L
Sbjct:   10 GTPEIGNLATPINSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPFSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGLGGAFFAFYL 146          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_NOSP7 (Photosystem I reaction center subunit XI OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.493e-25
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 3
Query:  447 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFL 893
            +V+ P   DP +G+LETP+ +SPL  W+++NLPAYR  +SP  RG+EVG+AHG+ + GPF K GPLR+T+             VV+L+  L++Y     N   P   P +T+       D   + + W  F   F   GI G + AYFL
Sbjct:   19 EVVFPAFRDPQLGNLETPVNASPLSKWFINNLPAYRPGLSPARRGLEVGMAHGYWIFGPFAKLGPLRDTDNANLAGLLAAIGLVVLLTGALSLYS----NSNPPKALPSVTVP--NPPVDAFNSKESWNNFASSFLIGGIGGAVVAYFL 161          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP6 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaL PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.726e-24
Identity = 60/142 (42.25%), Postives = 81/142 (57.04%), Query Frame = 3
Query:  468 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFL 893
            G P IG L TP  SSP    +++ LP YR  +S   RG+E+G+AHGFLL GP    GPLRNTE             VVIL++CL++YG    N G   +A   T+T     P +L T +GW++FT GF   G+ G  +A++L
Sbjct:    9 GTPEIGDLATPTNSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPLSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGLGGAFFAFYL 145          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_CYAA5 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain ATCC 51142) GN=psaL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.561e-24
Identity = 67/150 (44.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  468 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNLPL 917
            GDP IG+L TP+ SS L   ++ NLPAYR  +S   RG+EVG+AHG+ L GPF   GPLRNTE             + IL+I L++Y  AS   G+P      TLT     P+ L T+ GW +F  GFF  G  GVI+AY L   L   L
Sbjct:    8 GDPQIGNLATPVNSSRLSLAFIRNLPAYRRGLSANRRGLEVGMAHGYFLYGPFAILGPLRNTEYASTGGLLSAVAMISILTIALSLY--ASVEVGKPIE----TLT-TPDVPEDLGTSVGWGEFANGFFIGGSGGVIFAYLLCQALYFDL 150          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_PROM4 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9211) GN=psaL PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.685e-21
Identity = 56/153 (36.60%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  453 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVLNL 911
            ++P++ DPF+G+LETP+ S      +++NLP YR+ +SP  RG+EVG A G+LL GPF   GPLRNT+             V IL+    +Y        +P+  P       +  P  L T  GW  FT GF+  G  G ++A+ L   L+L
Sbjct:   39 VKPVS-DPFVGNLETPVNSGYFTKAFINNLPFYRSGISPNFRGLEVGAAFGYLLYGPFAMTGPLRNTDFALTAGLLSTIGAVHILTALFVLYTAPG---KDPNVQPSDCTV--ENPPTDLFTRTGWTDFTSGFWLGGCGGAVFAWLLCGTLHL 185          
BLAST of CK934597 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP2 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaL PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.812e-21
Identity = 54/146 (36.99%), Postives = 77/146 (52.74%), Query Frame = 3
Query:  468 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKFTGGFFFCGISGVIWAYFLLYVL 905
            GDP +G+L TPI +S     +++NLP YR  +S   RG+EVG+AHG+ L GPF   GPLRN +             + +L++ L++YG          + P  TLT     P+ L T +GW++F  GF   G  G + AY L   L
Sbjct:    8 GDPQVGNLATPINASAFSKAFINNLPGYRQGLSAQRRGLEVGMAHGYFLYGPFALLGPLRNADFAGVAGLLGTVGLISLLTLALSLYGSVGV------STPTATLT-TPNPPENLGTKEGWSEFAAGFLIGGCGGALVAYGLCIAL 146          
The following BLAST results are available for this feature:
BLAST of CK934597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_ISOGA1.001e-2638.67Photosystem I reaction center subunit XI OS=Isochr... [more]
PSAL_ANASP2.230e-2638.93Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_MASLA3.804e-2640.00Photosystem I reaction center subunit XI OS=Mastig... [more]
PSAL_ANAVT3.804e-2638.93Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_SYNE71.107e-2543.66Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_NOSP75.493e-2538.93Photosystem I reaction center subunit XI OS=Nostoc... [more]
PSAL_SYNP62.726e-2442.25Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_CYAA53.561e-2444.67Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_PROM43.685e-2136.60Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_SYNP24.812e-2136.99Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_B01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934597 ID=CK934597; Name=CK934597; organism=Citrus sinensis; type=EST; length=918bp
NCGGGGAAACAGAAGTCTTTTAACAAACACAANNNCAAATGGCTTCTGTT
TCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTC
CAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTG
TTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAA
AAGGTAACACATTGATGAAATATAAATGTTTATTCGGAATTCATAATCAT
CATCCTTTTCCTTTTTAAGAATGATAGTTATGGTTTTGCTTTTGAAATTG
AAATGGACTCATTAGTTATCAAGGTAGAGTGTTGCGGTTGGCAAGACTTC
TGTTGTTGTGCTTTCAAGATTAAATTAGAAGTATAGAGCAGTTATAAATA
TACCCTTTTTAAGTAATTTGATTTGCACTTTGTGCAGCCAACTTACCAAG
TTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGGAGACTCCA
ATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTACCAGCTTA
TCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGGGTTGGCCC
ATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCATTGAGAAAC
ACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGCCTTGTTGT
GATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATTCAATGAAG
GAGAGCCATCCACTGCTCCAGGCTTAACATTGACCGGAAGGAAGAAGGAG
CCTGATCAGTTGCAAACAGCTGATGGGTGGGCTAAGTTCACTGGAGGATT
CTTCTTTTGTGGAATTTCTGGTGTCATTTGGGCTTATTTCCTGCTTTATG
TCCTTAACCTTCCCTTAC
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