CK934598

Overview
NameCK934598
Unique NameCK934598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.720e-32
Identity = 76/181 (41.99%), Postives = 113/181 (62.43%), Query Frame = 2
Query:  374 DSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARA 910
            ++ LDVV +ND    +    ++ KYDS+ G F   V+  D + + ++ K I V   RDP+Q+PW   G + ++E TGVF     A  H++ GAKK++I+AP+  AD P +V GVN   YD +   +VSNASCTTNCLAP  KV++++ GIV+G +TT H+ T  Q+ +D  S +D R  R+
Sbjct:    2 ETDLDVVAINDPFIDLAYMVYMFKYDSVHGRFSGSVETKDGK-LWINQKPITVFRKRDPVQIPWGSAGAEYIVESTGVFTTTEKASAHLKGGAKKIVISAPS--ADAPMFVCGVNLDKYDPKF-QVVSNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHATTATQKTVDGPSAKDWRGGRS 178          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 3.552e-32
Identity = 77/180 (42.78%), Postives = 110/180 (61.11%), Query Frame = 2
Query:  383 LDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHRDL-RRARAAA 916
            +D+V +ND    +    ++ +YDS  G F   VK  +N  + ++GK I +   RDP  + W + G + V+E TGVF     AG H++ GAKKVII+AP+  AD P +V+GVN + Y++ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q+ +D     L R  R AA
Sbjct:   15 VDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK-AENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKKVIISAPS--ADAPMFVMGVNHEKYNNTL-KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAA 190          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.034e-31
Identity = 80/204 (39.22%), Postives = 119/204 (58.33%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS-GGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARA 910
            +++ INGFGRIGR  LR         + VV +ND     +   ++LKYD++ G F   +   + ++I+V+G  I V  +  P ++PW +  +DIV+E TG F     A  HI  G K+VII+AP+  AD P +V G N + YD     ++SNASCTTNCLAP   V++++ GI +G +TT H+ T  Q  +D  S +D R  R+
Sbjct:    3 IRLGINGFGRIGRMALRA--SLNIDGVQVVAINDPFTDCEYMEYMLKYDTVHGRFDGTIAHSE-DSITVNGNKISVFKSMKPEEIPWGKTQVDIVLECTGRFTTKKDAELHITGGCKRVIISAPS--ADAPMFVCGCNLETYDPSTMKVISNASCTTNCLAPLAMVVNKKFGIKEGLMTTVHAVTATQLPVDGPSKKDWRGGRS 201          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.350e-31
Identity = 72/161 (44.72%), Postives = 104/161 (64.60%), Query Frame = 2
Query:  431 HLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARA 910
            ++ KYDS+ G F+ +V   D + + ++GK I V + RDP  +PW  +G   V+E TGVF     A  H++ GAKKVII+AP+  +D P +V GVN   YD +   ++SNASCTTNCLAP  KV++++ GIV+G +TT H+ T  Q+ +D  S +D R  RA
Sbjct:   23 YMFKYDSVHGRFEGEVSTKDGKLV-INGKAITVFAERDPANIPWGTVGAQYVVESTGVFTTIEKASAHLKGGAKKVIISAPS--SDAPMFVCGVNLDAYDPK-HTVISNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHATTATQKTVDGPSPKDWRGGRA 179          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.546e-30
Identity = 85/197 (43.15%), Postives = 112/197 (56.85%), Query Frame = 2
Query:  332 RIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHRDL-RRARAAA 916
            RIGR  LR      D    VV VND    V    +L K+DS  G FK  V + +   + V+G+ I V S RDP  + WA  G + V+E TGVF     A  H++ GAKKV+I+AP+  AD P +V GVN   Y  ++  +VSNASCTTNCLAP  KV+++   IV+G +TT H+ T  Q+ +D     L R  R AA
Sbjct:    1 RIGRLVLRA---AIDKGASVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTV-VAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPS--ADAPMFVCGVNLDAYKPDM-KVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA 190          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.650e-29
Identity = 82/211 (38.86%), Postives = 124/211 (58.77%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDS--PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGA----DIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASH-RDLRRARAAA 916
            +K+ INGFGRIGR  LR    R D+   L+V+ +ND    +  ++LL++DS+ G    +V+   N  + +    I V ++   L+      G+D++IE +G F++      ++  GAKKV+++AP  G       PT V GVN   Y ++   IVSNASCTTN +AP   ++D+   I +G +TT HSYT DQ+L+D +H  D RR+RAAA
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVRY-SNYKLIIGSLEIPVFNSIKDLK------GVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQNQA--IVSNASCTTNAIAPICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAA 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.070e-28
Identity = 81/211 (38.39%), Postives = 123/211 (58.29%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDS--PLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGA----DIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASH-RDLRRARAAA 916
            +K+ INGFGRIGR  LR    R D+   L+V+ +ND    +  ++LL++DS  G    +V+  + + I +    I V ++   L+      G+ ++IE +G F++      ++  GAKKV+++AP  G       PT V GVN   Y ++   IVSNASCTTN +AP   ++D+   I +G +TT HSYT DQ+L+D +H  D RR+RAAA
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVRYSNGKLI-IGSLEIPVFNSIKDLK------GVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQNQA--IVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAA 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.685e-21
Identity = 56/114 (49.12%), Postives = 74/114 (64.91%), Query Frame = 2
Query:  578 DIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHRDL-RRARAAA 916
            + V+E TGVF     AG H++ GAK+VII+AP+  AD P +V+GVN + YD  +  IVSNA CTTNCLAP  KV+ +  GIV+G +TT H+ T  Q+ +D     L R  R AA
Sbjct:    2 EYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDKSL-KIVSNALCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPFGKLWRDGRGAA 112          
The following BLAST results are available for this feature:
BLAST of CK934598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_AMAMU2.720e-3241.99Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_SHEEP3.552e-3242.78Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_GIALA1.034e-3139.22Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P_BOLED1.350e-3144.72Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_DROSU2.546e-3043.15Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P_HELPY1.650e-2938.86Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPJ1.070e-2838.39Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_MELGA3.685e-2149.12Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_B02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934598 ID=CK934598; Name=CK934598; organism=Citrus sinensis; type=EST; length=916bp
GGGGAGCTTTAGAAGTTGCAGCAAATCAGCAACTAAGCCACAGGCCATGG
CCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGGCCATCACTAGGATT
CCATCCAAGACTACTCACTCTTTTCCCACTCAATGCTCCACCAAGAGGCT
GGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGCAGGCGCGACATACG
CCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTGTGACTGCTCAACTT
ACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAGAAAGAAACCGTGGC
CAAATTGAAGGTGGCAATTAATGGATTTGGACGTATTGGCAGGAACTTCC
TCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTGATGTTGTTGTTGTC
AATGACAGTGGTGGTGTCAAGAATGCTTCACACCTTCTAAAATATGACTC
ATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGTGGACAACGAGACCA
TCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTAACAGGGACCCTCTC
CAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTTATTGAGGGAACAGG
AGTTTTTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCA
AGAAAGTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTAT
GTCGTTGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGT
GAGCAATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCA
TGGATGAAGAATTGGGGATTGTCAAGGGAGCGATTACAACNNNTCACTCC
TACACTGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAG
AGCGAGAGCTGCAGCG
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