CK934598

Overview
NameCK934598
Unique NameCK934598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.940e-46
Identity = 105/206 (50.97%), Postives = 136/206 (66.02%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            +K+ INGFGRIGR  LR   GRKD  ++VV VND     + A+++ KYDS  G +K +V    ++ + +DG  IKV   RDP  +PW + G+D VIE TGVF    GA KHI AGAKKVIITAP+  AD P +VVGVNE  Y  ++  I+SNASCTTNCLAP  KV+++  GI +G +TT HS T  Q+ +D  SH+D R  R A+
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKD--IEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASGDDLV-IDGHKIKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPS--ADAPMFVVGVNEDKYTPDL-KIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTAS 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.534e-46
Identity = 104/204 (50.98%), Postives = 130/204 (63.73%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHRDLRRARAAA 916
            +KVAINGFGRIGR   R    + +  ++VV +ND    +  +HLLKYDS  G  K  + +  N  + +D K + V S +DP  LPW E  ID+VIE TG FV   GA  H++AGAK+VII+APAK   I T V  VN K    +   I+S ASCTTNCLAP V V+++  GIV G + T H+YT DQRL DA H DLRRARAAA
Sbjct:    8 IKVAINGFGRIGRLVFRSLLSKAN--VEVVAINDLTQPEVLAHLLKYDSAHGELKRKITVKQN-ILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAKRVIISAPAKEKTIRTVVYNVNHKTISSD-DKIISAASCTTNCLAPLVHVLEKNFGIVYGTMLTVHAYTADQRLQDAPHNDLRRARAAA 207          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.645e-46
Identity = 102/205 (49.76%), Postives = 135/205 (65.85%), Query Frame = 2
Query:  308 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHR--DLRRARAAA 916
            K+AINGFGRIGR  LR     +   L+VV +ND    K  +HL KYDS  G F  ++++ +   + V+GK +KV +  DP +LPW +LGID+V+E TG F     A  H++AGAKKV+I+APA G D+ T V  VN +D D     ++S ASCTTNCLAP  KV++++ GI KG +TT H++T DQ  LD  HR  DLRRARAAA
Sbjct:    3 KIAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIEVKEGAFV-VNGKEVKVFAEADPEKLPWGDLGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPA-GNDLKTIVFNVNNEDLD-GTETVISGASCTTNCLAPMAKVLNDKFGIEKGFMTTIHAFTNDQNTLDGPHRKGDLRRARAAA 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.258e-45
Identity = 106/206 (51.46%), Postives = 136/206 (66.02%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            +KVAINGFGRIGR  LR    RK   L+VV VND    V  A+++ KYDS  G +K +V    N+ + +DG  I V   +DP  LPW +LG+DIVI+ TGVF +   A KH+ AGAKKV+ITAP+K A  P +VVGVNE  Y+ E   IVSNASCTTNCLAP  K++++E GI +  +TT HS T  Q+ +D  SH+D R  R A+
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRK--ALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEVTTSGNDLV-IDGHKIAVFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSKTA--PMFVVGVNEDKYNGE--TIVSNASCTTNCLAPIAKIINDEFGIDEALMTTVHSITATQKTVDGPSHKDWRGGRTAS 200          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.145e-45
Identity = 104/206 (50.49%), Postives = 134/206 (65.05%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            + V INGFGRIGR  LR    R D  + VV +ND     + A+++ KYDS    +K +V    N+ I++DGK I V   RDP+ +PW + G+D VIE TGVF    GA KHI AGAKKV+ITAP+K  D P +VVGVNE+ Y  ++ NIVSNASCTTNCLAP  KV+++  GI  G +TT HS T  Q+ +D  SH+D R  R A+
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRAD--IKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSASGNK-INIDGKEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSK--DAPMFVVGVNEEKYTSDL-NIVSNASCTTNCLAPLAKVVNDTFGIESGLMTTVHSMTATQKTVDGPSHKDWRGGRTAS 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.145e-45
Identity = 102/206 (49.51%), Postives = 136/206 (66.02%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            + +AINGFGRIGR  LR    RK+  +DVV +ND    V  A+++ KYDS  G +K +V   D   + ++GK + V   +DP  LPW +LG+DI ++ TGVF +   A KHI AGAKKV+ITAP+K A  P +VVGVNE  Y+ E   IVSNASCTTNCLAP  K++++E GI +G +TT HS T  Q+ +D  SH+D R  R A+
Sbjct:    2 VSIAINGFGRIGRLVLRIALERKN--IDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVSH-DGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVITAPSKTA--PMFVVGVNEDKYNGE--KIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTAS 200          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.779e-45
Identity = 102/204 (50.00%), Postives = 134/204 (65.69%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHRDLRRARAAA 916
            ++VAINGFGRIGRN LR       + ++VV +ND G V+  +HLL++DS+ G F A V   D + I V    IKV + R+P +LPWA  G+D+ +E TG+F     A  H+Q GAK+V+++AP  GAD  T V GVN      +   +VSNASCTTNCL+P  KV+ + +GI KG +TT HSYTGDQ  LD  H+DL RARAAA
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTSGD-DWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDGAD-RTIVYGVNHATLTADDL-VVSNASCTTNCLSPVAKVLHDAIGIAKGFMTTIHSYTGDQPTLDTMHKDLYRARAAA 201          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.242e-45
Identity = 101/206 (49.03%), Postives = 134/206 (65.05%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            +KV INGFGRIGR   R  +  +   +++V VND       A+++LKYDS  G FK DVK  DN  + VDGK ++    RDP  +PWAE G D VIE TGVF     A  H++ GAKKVII+AP+  AD P +V+GVN + Y  ++  ++SNASCTTNCLAP  KV+++  G+V+G +TT HSYT  Q+ +D  S +D R  RAAA
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSDNG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPS--ADAPMFVMGVNNETYKSDI-KVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQKTVDGPSSKDWRGGRAAA 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 181.415 bits (459), Expect = 6.242e-45
Identity = 102/209 (48.80%), Postives = 134/209 (64.11%), Query Frame = 2
Query:  296 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGAD-IPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            +AKLKV INGFGRIGR  LR   G  +  ++ V +ND     N ++LLKYDS  G  ++ V+  D + I +DG  I  VS R+P +LPW +LG D V+E TG+F D  GA KH+QAGAK+VII+AP K  D + T +VGVN   +D     IVSNASCTTNCLAP  KV+++  G+ +G +TT H+ T  Q  +D  S +D R  R AA
Sbjct:    1 MAKLKVGINGFGRIGRLVLRA--GINNPNIEFVGINDLVPPDNLAYLLKYDSTHGKLRSQVEAKD-DGIVIDGHFIPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGAKRVIISAPTKDPDRVRTLLVGVNHDLFDPSKDVIVSNASCTTNCLAPIAKVINDNFGLTEGLMTTVHAMTATQPTVDGPSKKDWRGGRGAA 206          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.065e-44
Identity = 106/206 (51.46%), Postives = 135/206 (65.53%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            +KVAING G+IGR  +R    R +  ++VV +ND    V  A+++ KYDS  G +  DV+   N T+ +DGK IKV   RDP QLPW E GIDI I+ TGVF +   A KHI AGAKKV+ITAP+  A  P +V+GVNE+ Y  E   IVSNASCTTNCLAP  KV+DE+ GI +G +TT HS T  Q+ +D  S +D R  R A+
Sbjct:    2 VKVAINGLGKIGRLVMRIALSRAN--VEVVAINDPFITVDYAAYMFKYDSTHGKYAGDVQYEGN-TLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTA--PMFVMGVNEEKYAGE--TIVSNASCTTNCLAPLAKVIDEQFGIEEGLMTTVHSLTATQKTVDGPSMKDWRGGRTAS 200          
The following BLAST results are available for this feature:
BLAST of CK934598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_CANAL1.940e-4650.97Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_MYCGE2.534e-4650.98Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_CLOAB5.645e-4649.76Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P1_KLULA1.258e-4551.46Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_PICPA2.145e-4550.49Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_KLUMA2.145e-4549.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P2_RHOSH4.779e-4550.00Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_COCIM6.242e-4549.03Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_ANAVT6.242e-4548.80Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_ASHGO1.065e-4451.46Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004229_B02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934598 ID=CK934598; Name=CK934598; organism=Citrus sinensis; type=EST; length=916bp
GGGGAGCTTTAGAAGTTGCAGCAAATCAGCAACTAAGCCACAGGCCATGG
CCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGGCCATCACTAGGATT
CCATCCAAGACTACTCACTCTTTTCCCACTCAATGCTCCACCAAGAGGCT
GGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGCAGGCGCGACATACG
CCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTGTGACTGCTCAACTT
ACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAGAAAGAAACCGTGGC
CAAATTGAAGGTGGCAATTAATGGATTTGGACGTATTGGCAGGAACTTCC
TCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTGATGTTGTTGTTGTC
AATGACAGTGGTGGTGTCAAGAATGCTTCACACCTTCTAAAATATGACTC
ATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGTGGACAACGAGACCA
TCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTAACAGGGACCCTCTC
CAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTTATTGAGGGAACAGG
AGTTTTTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCA
AGAAAGTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTAT
GTCGTTGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGT
GAGCAATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCA
TGGATGAAGAATTGGGGATTGTCAAGGGAGCGATTACAACNNNTCACTCC
TACACTGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAG
AGCGAGAGCTGCAGCG
back to top