CK934598

Overview
NameCK934598
Unique NameCK934598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.301e-42
Identity = 98/209 (46.89%), Postives = 138/209 (66.03%), Query Frame = 2
Query:  299 AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKAD-VKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            AK+K+ INGFGRIGR   R    R D  +++V VND     +  +++ KYDS+ G +K D + + D+ T+    K + V ++R+P ++PWA  G DI++E TGVF D   A  H++ GAKKVII+AP+K  D P +VVGVNE +Y  E  +I+SNASCTTNCLAP  KV+++  GIV+G +TT HS T  Q+ +D  S +D R  RAA+
Sbjct:    3 AKIKIGINGFGRIGRLVARVALKRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNENEYKPEF-DIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAAS 206          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.700e-42
Identity = 96/205 (46.83%), Postives = 132/205 (64.39%), Query Frame = 2
Query:  308 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            KV INGFGRIGR   R  +      +DVV VND       A+++LKYDS  G FK  ++  + E + V+GK I+  + RDP  +PW   G D ++E TGVF     A  H++ GAKKV+I+AP+  AD P +V+GVN   Y  ++ N++SNASCTTNCLAP  KV++++ GIV+G +TT HSYT  Q+++DA S +D R  R AA
Sbjct:    4 KVGINGFGRIGRIVFR--NAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIETYE-EGLIVNGKKIRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPS--ADAPMFVMGVNNTSYTKDI-NVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSSKDWRGGRTAA 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.700e-42
Identity = 96/206 (46.60%), Postives = 132/206 (64.08%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            +KV INGFGRIGR   R  +  +   ++VV VND       A+++LKYDS  G FK  + +  N  ++V+GK +     RDP  +PW + G++ V+E TGVF     A  H++ GAKKVII+AP+  AD P +V+GVNEK YD  V N++SNASCTTNCLAP  KV+++  G+ +G +TT HSYT  Q+ +D  S +D R  R AA
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTIDVNSNG-LTVNGKAVTFYQERDPASIPWGKHGVEYVVESTGVFTTTEKASAHLKGGAKKVIISAPS--ADAPMFVMGVNEKTYDPSV-NVLSNASCTTNCLAPLAKVINDNFGLTEGLMTTIHSYTATQKTVDGPSSKDWRGGRTAA 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.700e-42
Identity = 97/205 (47.32%), Postives = 130/205 (63.41%), Query Frame = 2
Query:  308 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            KV INGFGRIGR  LR  +  +   ++VV +ND     + A ++ KYDS  G FK D+K VD + + +DGK IK    RDP  +PW + G + ++E TGVF     A  H + GAKKVII+AP+  AD P YV+GVNE  Y    AN++SNASCTTNCLAP  K ++++  IV+G +T  H+YT  Q+ +D  S +D R  RAAA
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIK-VDGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVIISAPS--ADAPMYVMGVNEDTY--AGANVISNASCTTNCLAPLAKTLNDKFTIVEGLMTAIHAYTASQKTVDGPSSKDWRGGRAAA 201          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.700e-42
Identity = 102/206 (49.51%), Postives = 129/206 (62.62%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHR--DLRRARAAA 916
            +KVAINGFGRIGR   R    +    L+VV VND       +HLLKYD++ G F  +V++++     V+GK IK     D  +LPW +L ID+V+E TG + D   A  HI AGAKKV+I+APAKG D+ T V   N    D     +VS ASCTTN LAP  KV+ +E G+V+G +TT H+YTGDQ   DA HR  D RRARAAA
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVIEGG-FRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKG-DVKTIVFNTNHDTLDGS-ETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHRKGDKRRARAAA 203          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.700e-42
Identity = 102/206 (49.51%), Postives = 129/206 (62.62%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDASHR--DLRRARAAA 916
            +KVAINGFGRIGR   R    +    L+VV VND       +HLLKYD++ G F  +V++++     V+GK IK     D  +LPW +L ID+V+E TG + D   A  HI AGAKKV+I+APAKG D+ T V   N    D     +VS ASCTTN LAP  KV+ +E G+V+G +TT H+YTGDQ   DA HR  D RRARAAA
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVIEGG-FRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKG-DVKTIVFNTNHDTLDGS-ETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHRKGDKRRARAAA 203          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.220e-42
Identity = 97/206 (47.09%), Postives = 132/206 (64.08%), Query Frame = 2
Query:  305 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            +KV INGFGRIGR  LR  +  K+  ++VV VND     + A+++ KYDS  G FK  V+  D   I +DGK I+V   RDP  +PW + G D V+E TGVF     A  H++ GAKKVII+AP+   D P +VVGVN   Y  ++  ++SNASCTTNCLAP  KV++++ GI++G +TT HS T  Q+ +D  SH+D R  R A+
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVEAKDGGLI-IDGKHIQVFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPS--GDAPMFVVGVNLDAYKPDM-TVISNASCTTNCLAPLAKVVNDKYGIIEGLMTTVHSITATQKTVDGPSHKDWRGGRTAS 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.220e-42
Identity = 98/204 (48.04%), Postives = 133/204 (65.20%), Query Frame = 2
Query:  311 VAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKN-ASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAAA 916
            V INGFGRIGR  LR    R D  ++V+ +ND     + A+++ KYDS  G FK  V   + + + ++GK I+V   RDP  +PW + G+D V++ TGVF    GA KHI AGAKKVIITAP+K  D P +VVGVN ++Y  ++  I+SNASCTTNCLAP  KV+++  GI +G +TT HS T  Q+ +D  SH+D R  R A+
Sbjct:    5 VGINGFGRIGRLVLRIALSRDD--INVIAINDPFIAPDYAAYMFKYDSTHGKFKGTVTH-EGKYLVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQKHIDAGAKKVIITAPSK--DAPMFVVGVNHEEYTPDI-KILSNASCTTNCLAPLAKVINDIFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTAS 202          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.220e-42
Identity = 97/210 (46.19%), Postives = 137/210 (65.24%), Query Frame = 2
Query:  293 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAA 913
            +  K+K+ INGFGRIGR   R    R D  +++V VND     ++ + L KYDS+ G +K  +VK+ D +T+    K + V   R+P ++PW E+G + V+E TGVF D   A  H++ GAKKV+I+AP+K  D P +VVGVNE +Y  ++  IVSNASCTTNCLAP  KV+++  GIV+G +TT HS T  Q+ +D  S++D R  RAA
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALQRDD--IELVAVNDPFISTESLTSLFKYDSVHGQWKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSDL-TIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRAA 207          
BLAST of CK934598 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.220e-42
Identity = 98/210 (46.67%), Postives = 137/210 (65.24%), Query Frame = 2
Query:  293 TVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKA-DVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTXHSYTGDQRLLDA-SHRDLRRARAA 913
            +  K+K+ INGFGRIGR   R    R D  +++V VND        S++ KYDS+ G +K  +V + D++T+    K + V   R+P ++PW E+G + V+E TGVF D   A  H++AGAKKV+I+AP+K  D P +VVGVNE  Y  +V NIVSNASCTTNCLAP  KV++++ GIV+G +TT HS T  Q+ +D  S++D R  R A
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALTRDD--IELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSK--DAPMFVVGVNEHQYKSDV-NIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGA 207          
The following BLAST results are available for this feature:
BLAST of CK934598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PC_PEA1.301e-4246.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ASPNG1.700e-4246.83Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_AJECA1.700e-4246.60Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P1_TRIKO1.700e-4247.32Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P1_STAES1.700e-4249.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ1.700e-4249.51Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P_YARLI2.220e-4247.09Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_PICAN2.220e-4248.04Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3PC_TAXBA2.220e-4246.19Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY2.220e-4246.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004229_B02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934598 ID=CK934598; Name=CK934598; organism=Citrus sinensis; type=EST; length=916bp
GGGGAGCTTTAGAAGTTGCAGCAAATCAGCAACTAAGCCACAGGCCATGG
CCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGGCCATCACTAGGATT
CCATCCAAGACTACTCACTCTTTTCCCACTCAATGCTCCACCAAGAGGCT
GGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGCAGGCGCGACATACG
CCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTGTGACTGCTCAACTT
ACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAGAAAGAAACCGTGGC
CAAATTGAAGGTGGCAATTAATGGATTTGGACGTATTGGCAGGAACTTCC
TCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTGATGTTGTTGTTGTC
AATGACAGTGGTGGTGTCAAGAATGCTTCACACCTTCTAAAATATGACTC
ATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGTGGACAACGAGACCA
TCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTAACAGGGACCCTCTC
CAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTTATTGAGGGAACAGG
AGTTTTTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCA
AGAAAGTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTAT
GTCGTTGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGT
GAGCAATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCA
TGGATGAAGAATTGGGGATTGTCAAGGGAGCGATTACAACNNNTCACTCC
TACACTGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAG
AGCGAGAGCTGCAGCG
back to top