CK934603

Overview
NameCK934603
Unique NameCK934603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934603 vs. ExPASy Swiss-Prot
Match: CLIC5_HUMAN (Chloride intracellular channel protein 5 OS=Homo sapiens GN=CLIC5 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.141e-12
Identity = 55/219 (25.11%), Postives = 100/219 (45.66%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSGVIVRIIE-----EKYPEPSLTNPPEFASVGSKVFPSFVNFLKS--KDPNDGTEQTLLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 653
            + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D   I   +E     EKYP+ +  +  E  + G  +F  F  ++K+  +  N   E+ L + LK LD++L T                    F+ G+++T  D +L PKL+ +++  + ++ + +P  +  +  Y K  +A + F  T A
Sbjct:  175 IYLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALKKLDDYLNTPLPEEIDANTCGEDKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEMTGLWRYLKNAYARDEFTNTCA 391          
BLAST of CK934603 vs. ExPASy Swiss-Prot
Match: CLIC3_MOUSE (Chloride intracellular channel protein 3 OS=Mus musculus GN=Clic3 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.796e-12
Identity = 58/236 (24.58%), Postives = 99/236 (41.95%), Query Frame = 3
Query:   66 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSGVIVRIIEEKYPEPSLTNPPEFASV----------GSKVFPSFVNFLKSKDP--NDGTEQTLLEELKALDE--------------HLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKAEKQYVIAGWVPKVN 695
            +++ VKA+     + G CP  QR  + L  K VP+    ++         + +P  ++P++ +D     D+  I   +EE         PP+F S+          G+ +F  F  F+K+  P  ++   Q LL  L  LD               HL+     F+ G++ T  D SL PKL+ +     HF+Q  +P  L+ V  Y       + F+ T      ++A + P V+
Sbjct:    7 LQLFVKASEDGESV-GHCPSCQRLFMVLLLKGVPFTLTTVDTRRALDVLKDFAPGSQLPILLYDGDVKTDTLQIEEFLEETL------GPPDFPSLAPRYRESNTAGNDIFHKFSAFIKNPVPTQDNALYQQLLRALTRLDSYLRAPLDHELAQEPHLRESHRRFLDGDQFTLADCSLLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKYTCPHSAEILAAYQPAVH 235          
BLAST of CK934603 vs. ExPASy Swiss-Prot
Match: CLIC5_BOVIN (Chloride intracellular channel protein 5 OS=Bos taurus GN=CLIC5 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 56/224 (25.00%), Postives = 99/224 (44.20%), Query Frame = 3
Query:   54 AKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSGVIVRIIE-----EKYPEPSLTNPPEFASVGSKVFPSFVNFLKS--KDPNDGTEQTLLEELKALDEHLKT-----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYTKKLFALESFQKTKA 653
            A   + + VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D   I   +E     EKYP  +  +  E  + G  +F  F  ++K+  +  N   E+ L + LK LD++L T                     F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +  Y K  +A + F  T A
Sbjct:  197 ASPEINLFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPRLAAKH-RESNTAGIDIFVKFSAYIKNTKQQSNAALERGLTKALKKLDDYLNTPLPEEIDADTRGDDEKGSRRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDFPAEMTGLWRYLKNAYARDEFTNTCA 418          
BLAST of CK934603 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSGVIVRIIEEKYPEPSL--TNPPEFA------SVGSKVFPSFVNFLKSKDPND--GTEQTLLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 557
            CPF+QR LL L  K + ++   IN+ +KP+WF + +P G VPV++    + + +S +    ++E YP   L   +P E A       + SKV P  + F++ ++  D  G ++ L +E   L+E L      +  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPSGLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSKVPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLIWPWFERLE-ALE 188          
BLAST of CK934603 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 53/171 (30.99%), Postives = 82/171 (47.95%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSGVIVRIIEEKYPEPSLTNPPEFASVG--------SKVFPSFVNFLKSKDPND--GTEQTLLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAH 596
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      V +S +    ++E YPE  L     +            SKV P   +F++SK   D     + L  E K L+E +  +   F+ G+  + VD    P    L+ ALE      + E LAH
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKS-FLGGDSPSMVDYLTWPWFQRLE-ALE------LKECLAH 194          
BLAST of CK934603 vs. ExPASy Swiss-Prot
Match: GSTO1_RAT (Glutathione S-transferase omega-1 OS=Rattus norvegicus GN=Gsto1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  117 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSGVIVRIIEEKYPEPSL--TNPPEFA------SVGSKVFPSFVNFLKSKDPND--GTEQTLLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALE 557
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      + +S +    ++E YPE  L   +P E A       + SKV     +F+++K   D  G ++ L +E   L+E +      F  G  ++ +D  + P    L+ ALE
Sbjct:   32 CPFAQRTLMVLKAKGIRHEIININLKNKPEWFFEKNPFGLVPVLENTQGHLITESVITCEYLDEAYPEKKLFPDDPYEKACQKMTFELFSKVPSLVTSFIRAKRKEDHPGIKEELKKEFSKLEEAMANKRTAFFGGNSLSMIDYLIWPWFQRLE-ALE 188          
The following BLAST results are available for this feature:
BLAST of CK934603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CLIC5_HUMAN2.141e-1225.11Chloride intracellular channel protein 5 OS=Homo s... [more]
CLIC3_MOUSE2.796e-1224.58Chloride intracellular channel protein 3 OS=Mus mu... [more]
CLIC5_BOVIN4.769e-1225.00Chloride intracellular channel protein 5 OS=Bos ta... [more]
GSTO1_PIG2.367e-1129.75Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]
GSTO1_MOUSE3.091e-1130.99Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
GSTO1_RAT4.037e-1130.38Glutathione S-transferase omega-1 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_A04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934603 ID=CK934603; Name=CK934603; organism=Citrus sinensis; type=EST; length=858bp
GGGGTCGGGTTTTNNNTAACAGCAACATACACTCTCTCTGATCACTCAAT
TCCGCAAAAATGGCCGTGGAGATTTGTGTGAAAGCCGCTGTTGGCGCTCC
TGATATTCTCGGGGACTGCCCATTTTCCCAAAGAGCTTTGCTTACTTTGG
AGGAAAAGAAAGTTCCATACAAGCGTCACCTCATCAATATCAGTGACAAG
CCTCAATGGTTTTTGGAGATAAGCCCAGAAGGGAAAGTACCTGTGGTAAA
GTTTGATGACAAGTGGGTGGCTGACTCTGGTGTGATTGTTAGAATTATTG
AGGAGAAGTATCCTGAGCCTTCTCTTACTAATCCTCCTGAATTTGCCTCT
GTTGGATCAAAGGTATTCCCATCTTTTGTCAATTTCTTGAAGAGCAAGGA
CCCAAATGATGGGACAGAGCAAACTTTGCTGGAGGAATTGAAAGCATTGG
ATGAGCATCTTAAGACTCATGGAGGTCCATTCATTGCTGGAGAGAAGGTC
ACTGCTGTAGATTTGAGCTTGGCACCAAAGCTGTACCACCTTCAGGTAGC
TCTTGAACATTTCAAGCAGTGGACTGTCCCTGAGAGCTTGGCTCATGTCC
ATGGGTACACGAAGAAGCTTTTTGCTCTGGAATCCTTTCAGAAGACTAAG
GCTGAAAAGCAATACGTGATTGCAGGATGGGTGCCGAAGGTCAATGCATG
AACTAGTTCTAAGCTATGCGGTGTTTGAAATCTAGCTAATGAAATGCGAG
TAATGTATGTGTGAGACTTGGAGCATAAGTAGAATGTTCACTGGGGGGTT
TGTATCATCCAATAAAGGTGGCTACGATGATATTTGCTATTTGTTATAAT
GAAACCTC
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