CK934608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBB_PROHO (Photosystem II CP47 chlorophyll apoprotein OS=Prochlorothrix hollandica GN=psbB PE=3 SV=1) HSP 1 Score: 380.948 bits (977), Expect = 5.599e-105 Identity = 174/264 (65.91%), Postives = 205/264 (77.65%), Query Frame = 3 Query: 180 MGLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGT-VTNPGI-------WSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVDDRTGKRSLDLPKIFGIHLFLSGVACFGFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIXXXXXXXXXXXGTM 947 MGLPWYRVHT V+NDPGRL+AVH+MHTALV GWAGSMALYELAVFDPSD VL+PMWRQGMFV+PFMTRLG+T SW GW++TG + PG WSYEGVA HIV SGL FLAA+WHWVYWDL +F D RTG+ +LDLPKIFG HLFL G CF FGTFH+TG++GPG+WVSD YGLTG ++ + P WG GF+PF PGG+ +HHIAAG ++ G+FHL+ RPP+RLY LRMGN+ET L+S+I GTM Sbjct: 1 MGLPWYRVHTAVINDPGRLLAVHLMHTALVLGWAGSMALYELAVFDPSDAVLNPMWRQGMFVLPFMTRLGVTHSWSGWTVTGEPWINEPGFLNAHFNFWSYEGVALMHIVLSGLFFLAAVWHWVYWDLDLFEDPRTGEPALDLPKIFGGHLFLLGFLCFNFGTFHLTGIFGPGMWVSDAYGLTGHIEHIAPEWGPAGFNPFNPGGVVAHHIAAGITLMIGGVFHLTARPPERLYTALRMGNVETALASAIAAVFGAAFVVAGTM 264
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBB_OSTTA (Photosystem II CP47 chlorophyll apoprotein OS=Ostreococcus tauri GN=psbB PE=3 SV=2) HSP 1 Score: 335.88 bits (860), Expect = 2.066e-91 Identity = 152/202 (75.25%), Postives = 172/202 (85.15%), Query Frame = 3 Query: 342 MWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVDDRTGKRSLDLPKIFGIHLFLSGVACFGFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIXXXXXXXXXXXGTM 947 MWRQGMFV+PFMTRLG+T+SWGGW+I+G + +NPG+WSYEGVA +HI+ SGL FLAAIWHWV+WDL +F D RT + +LDLPKIFGIHLFLSGV CFGFG FHVTGL+GPGIWVSDPYGLTG V+ V PAWG EGFDP+ PGGIA+HHIAAG +GILAGLFHLSVRPPQRLYK LRMGN+ETVLSSSI GTM Sbjct: 1 MWRQGMFVLPFMTRLGVTNSWGGWTISGESTSNPGLWSYEGVAASHIILSGLLFLAAIWHWVFWDLELFRDPRTQQPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGAVEPVAPAWGAEGFDPYNPGGIAAHHIAAGIVGILAGLFHLSVRPPQRLYKALRMGNVETVLSSSIAAVFWAAFVVGGTM 202
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PROHO (Photosystem II 44 kDa reaction center protein OS=Prochlorothrix hollandica GN=psbC PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.853e-13 Identity = 68/243 (27.98%), Postives = 102/243 (41.98%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWV--------YWDLAIFVDDRTGKRSLDLPKIFGIHLFLSGV--ACFGFGTFHVTGLYGPGIWVSDPYG---LTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G PW+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P P++ QG ++P + LG WG GG +T+ I Y V H++ S + L ++H + Y D F D K + I G HL + G+ + F F GLY P WV G +T S + +G PF G + HI + G +HL RP Sbjct: 17 GYPWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHFTPE----KPLYEQGDILLPHLASLG----WGVG--PGGEITD--ITPYFIVGVLHLISSAVLGLGGVYHTLRGPETLEQYSD--FFSQDWKDKN--QMTNILGFHLIVLGIGASLFVFKAMFFGGLYDP--WVPGGGGVRVITNPTLSPSVLFGYLFRSPFGGEGWLIGVNNMEDVVGGHIWVALHCFIGGAWHLITRP 241
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PEA (Photosystem II CP43 chlorophyll apoprotein OS=Pisum sativum GN=psbC PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12 Identity = 65/239 (27.20%), Postives = 103/239 (43.10%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F F+ G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGSFLLVFKAFYFGGIYDTWAPG--GGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_JASNU (Photosystem II CP43 chlorophyll apoprotein OS=Jasminum nudiflorum GN=psbC PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.497e-12 Identity = 65/239 (27.20%), Postives = 103/239 (43.10%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG VT+ + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVTDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_MAIZE (Photosystem II CP43 chlorophyll apoprotein OS=Zea mays GN=psbC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 3.262e-12 Identity = 65/245 (26.53%), Postives = 104/245 (42.45%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAI--------FVDDRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G PW+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG S GG V + + GV H++ S + I+H + + +V K + + GIHL L G+ F FG + T G G D +T S +G PF G I H+ G++ +L G++H+ +P Sbjct: 32 GFPWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVGS--GGEVLDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWQDRNK----MTTLLGIHLILLGLGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPGVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICVLGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUCSA (Photosystem II CP43 chlorophyll apoprotein OS=Cucumis sativus GN=psbC PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.260e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SOYBN (Photosystem II CP43 chlorophyll apoprotein OS=Glycine max GN=psbC PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.563e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_POPTR (Photosystem II CP43 chlorophyll apoprotein OS=Populus trichocarpa GN=psbC PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.563e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_POPAL (Photosystem II CP43 chlorophyll apoprotein OS=Populus alba GN=psbC PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.563e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256 The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 218
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bpback to top |