CK934608

Overview
NameCK934608
Unique NameCK934608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBB_PROHO (Photosystem II CP47 chlorophyll apoprotein OS=Prochlorothrix hollandica GN=psbB PE=3 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 5.599e-105
Identity = 174/264 (65.91%), Postives = 205/264 (77.65%), Query Frame = 3
Query:  180 MGLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGT-VTNPGI-------WSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVDDRTGKRSLDLPKIFGIHLFLSGVACFGFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIXXXXXXXXXXXGTM 947
            MGLPWYRVHT V+NDPGRL+AVH+MHTALV GWAGSMALYELAVFDPSD VL+PMWRQGMFV+PFMTRLG+T SW GW++TG   +  PG        WSYEGVA  HIV SGL FLAA+WHWVYWDL +F D RTG+ +LDLPKIFG HLFL G  CF FGTFH+TG++GPG+WVSD YGLTG ++ + P WG  GF+PF PGG+ +HHIAAG   ++ G+FHL+ RPP+RLY  LRMGN+ET L+S+I           GTM
Sbjct:    1 MGLPWYRVHTAVINDPGRLLAVHLMHTALVLGWAGSMALYELAVFDPSDAVLNPMWRQGMFVLPFMTRLGVTHSWSGWTVTGEPWINEPGFLNAHFNFWSYEGVALMHIVLSGLFFLAAVWHWVYWDLDLFEDPRTGEPALDLPKIFGGHLFLLGFLCFNFGTFHLTGIFGPGMWVSDAYGLTGHIEHIAPEWGPAGFNPFNPGGVVAHHIAAGITLMIGGVFHLTARPPERLYTALRMGNVETALASAIAAVFGAAFVVAGTM 264          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBB_OSTTA (Photosystem II CP47 chlorophyll apoprotein OS=Ostreococcus tauri GN=psbB PE=3 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 2.066e-91
Identity = 152/202 (75.25%), Postives = 172/202 (85.15%), Query Frame = 3
Query:  342 MWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVDDRTGKRSLDLPKIFGIHLFLSGVACFGFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIXXXXXXXXXXXGTM 947
            MWRQGMFV+PFMTRLG+T+SWGGW+I+G + +NPG+WSYEGVA +HI+ SGL FLAAIWHWV+WDL +F D RT + +LDLPKIFGIHLFLSGV CFGFG FHVTGL+GPGIWVSDPYGLTG V+ V PAWG EGFDP+ PGGIA+HHIAAG +GILAGLFHLSVRPPQRLYK LRMGN+ETVLSSSI           GTM
Sbjct:    1 MWRQGMFVLPFMTRLGVTNSWGGWTISGESTSNPGLWSYEGVAASHIILSGLLFLAAIWHWVFWDLELFRDPRTQQPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGAVEPVAPAWGAEGFDPYNPGGIAAHHIAAGIVGILAGLFHLSVRPPQRLYKALRMGNVETVLSSSIAAVFWAAFVVGGTM 202          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PROHO (Photosystem II 44 kDa reaction center protein OS=Prochlorothrix hollandica GN=psbC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.853e-13
Identity = 68/243 (27.98%), Postives = 102/243 (41.98%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWV--------YWDLAIFVDDRTGKRSLDLPKIFGIHLFLSGV--ACFGFGTFHVTGLYGPGIWVSDPYG---LTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G PW+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      P++ QG  ++P +  LG    WG     GG +T+  I  Y  V   H++ S +  L  ++H +        Y D   F  D   K    +  I G HL + G+  + F F      GLY P  WV    G   +T    S +  +G     PF   G          +   HI       + G +HL  RP
Sbjct:   17 GYPWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHFTPE----KPLYEQGDILLPHLASLG----WGVG--PGGEITD--ITPYFIVGVLHLISSAVLGLGGVYHTLRGPETLEQYSD--FFSQDWKDKN--QMTNILGFHLIVLGIGASLFVFKAMFFGGLYDP--WVPGGGGVRVITNPTLSPSVLFGYLFRSPFGGEGWLIGVNNMEDVVGGHIWVALHCFIGGAWHLITRP 241          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PEA (Photosystem II CP43 chlorophyll apoprotein OS=Pisum sativum GN=psbC PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 65/239 (27.20%), Postives = 103/239 (43.10%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F  F+  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGSFLLVFKAFYFGGIYDTWAPG--GGDVRKITNFTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_JASNU (Photosystem II CP43 chlorophyll apoprotein OS=Jasminum nudiflorum GN=psbC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.497e-12
Identity = 65/239 (27.20%), Postives = 103/239 (43.10%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG VT+   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVTDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_MAIZE (Photosystem II CP43 chlorophyll apoprotein OS=Zea mays GN=psbC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.262e-12
Identity = 65/245 (26.53%), Postives = 104/245 (42.45%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAI--------FVDDRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G PW+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG  S  GG V +   +   GV   H++ S +     I+H +     +        +V     K    +  + GIHL L G+  F        FG  + T   G G    D   +T    S    +G     PF   G          I   H+  G++ +L G++H+  +P
Sbjct:   32 GFPWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVGS--GGEVLDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWQDRNK----MTTLLGIHLILLGLGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPGVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICVLGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUCSA (Photosystem II CP43 chlorophyll apoprotein OS=Cucumis sativus GN=psbC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.260e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SOYBN (Photosystem II CP43 chlorophyll apoprotein OS=Glycine max GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.563e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGIYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_POPTR (Photosystem II CP43 chlorophyll apoprotein OS=Populus trichocarpa GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.563e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_POPAL (Photosystem II CP43 chlorophyll apoprotein OS=Populus alba GN=psbC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.563e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PSBB_PROHO5.599e-10565.91Photosystem II CP47 chlorophyll apoprotein OS=Proc... [more]
PSBB_OSTTA2.066e-9175.25Photosystem II CP47 chlorophyll apoprotein OS=Ostr... [more]
PSBC_PROHO3.853e-1327.98Photosystem II 44 kDa reaction center protein OS=P... [more]
PSBC_PEA1.912e-1227.20Photosystem II CP43 chlorophyll apoprotein OS=Pisu... [more]
PSBC_JASNU2.497e-1227.20Photosystem II CP43 chlorophyll apoprotein OS=Jasm... [more]
PSBC_MAIZE3.262e-1226.53Photosystem II CP43 chlorophyll apoprotein OS=Zea ... [more]
PSBC_CUCSA4.260e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Cucu... [more]
PSBC_SOYBN5.563e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Glyc... [more]
PSBC_POPTR5.563e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Popu... [more]
PSBC_POPAL5.563e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Popu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bp
GGGGCTTCTCTTTTTTCCTACGAACCGAACTCTTCCATTATTACTAAAAG
AATAGAACAAATATTAATATTAATCCCTTTTTCGAGATAATCCCCTGAAA
AAAGGGGTACATAGCATAGTTTTTTTCAATGCAATAAAGTTACATAGTGT
CTATTTTTTATTAATAAAGGGGTAGTCCCATGGGTTTGCCTTGGTATCGT
GTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTGCTGTCCATAT
AATGCATACAGCCCTGGTTGCGGGTTGGGCCGGTTCAATGGCTCTATATG
AATTAGCTGTTTTTGATCCCTCCGATCCAGTTCTTGATCCAATGTGGAGA
CAAGGCATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCGATTC
ATGGGGTGGTTGGAGTATTACAGGGGGGACAGTAACGAATCCGGGTATTT
GGAGTTACGAAGGTGTAGCGGGGGCACATATTGTGTTTTCCGGATTGTGC
TTCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGCAATATTTGT
TGATGACCGTACAGGAAAACGTTCTTTGGATTTGCCTAAAATCTTTGGAA
TTCATTTATTTCTCTCAGGAGTGGCTTGCTTTGGTTTTGGGACATTTCAT
GTAACAGGATTGTATGGTCCTGGAATATGGGTGTCTGATCCGTATGGACT
AACTGGAAAGGTACAATCTGTAAATCCAGCATGGGGTGTGGAAGGTTTTG
ATCCTTTTGTTCCAGGAGGAATAGCCTCTCATCATATTGCGGCAGGGACA
TTGGGCATATTAGCAGGCTTATTCCATCTCAGTGTCCGCCCGCCACAACG
CTTATACAAAGGATTACGTATGGGCAATATTGAAACCGTTCTTTCCAGCA
GCATCGCTGCTGTCTTTTTTGCAGCGTTTGTTGTTGCTGGAACTATGT
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