CK934608

Overview
NameCK934608
Unique NameCK934608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SOLLC (Photosystem II CP43 chlorophyll apoprotein OS=Solanum lycopersicum GN=psbC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SOLBU (Photosystem II CP43 chlorophyll apoprotein OS=Solanum bulbocastanum GN=psbC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LACSA (Photosystem II CP43 chlorophyll apoprotein OS=Lactuca sativa GN=psbC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_ATRBE (Photosystem II CP43 chlorophyll apoprotein OS=Atropa belladonna GN=psbC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_AETCO (Photosystem II CP43 chlorophyll apoprotein OS=Aethionema cordifolium GN=psbC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12
Identity = 64/240 (26.67%), Postives = 101/240 (42.08%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSI-TGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  L       GW I  GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L GV  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATL-------GWGIGPGGEVIDTFPYFVSGV--LHVISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 chlorophyll apoprotein OS=Spinacia oleracea GN=psbC PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G + IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNVTLSPSIIFGCLLKSPFGGEGWIVSVDDLEDIIGGHVWIGVICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PELHO (Photosystem II CP43 chlorophyll apoprotein OS=Pelargonium hortorum GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/241 (26.56%), Postives = 100/241 (41.49%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG  ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F        FG  + T   G G    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGFILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALSFGGVYDTWAPGGG----DVRKITNLTLSPSVLFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PANGI (Photosystem II CP43 chlorophyll apoprotein OS=Panax ginseng GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGGMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_OLIPU (Photosystem II CP43 chlorophyll apoprotein OS=Olimarabidopsis pumila GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L GV  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHVISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_NYMAL (Photosystem II CP43 chlorophyll apoprotein OS=Nymphaea alba GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRRITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PSBC_SOLLC7.266e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Sola... [more]
PSBC_SOLBU7.266e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Sola... [more]
PSBC_LACSA7.266e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Lact... [more]
PSBC_ATRBE7.266e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Atro... [more]
PSBC_AETCO7.266e-1226.67Photosystem II CP43 chlorophyll apoprotein OS=Aeth... [more]
PSBC_SPIOL9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Spin... [more]
PSBC_PELHO9.490e-1226.56Photosystem II CP43 chlorophyll apoprotein OS=Pela... [more]
PSBC_PANGI9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Pana... [more]
PSBC_OLIPU9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Olim... [more]
PSBC_NYMAL9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Nymp... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bp
GGGGCTTCTCTTTTTTCCTACGAACCGAACTCTTCCATTATTACTAAAAG
AATAGAACAAATATTAATATTAATCCCTTTTTCGAGATAATCCCCTGAAA
AAAGGGGTACATAGCATAGTTTTTTTCAATGCAATAAAGTTACATAGTGT
CTATTTTTTATTAATAAAGGGGTAGTCCCATGGGTTTGCCTTGGTATCGT
GTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTGCTGTCCATAT
AATGCATACAGCCCTGGTTGCGGGTTGGGCCGGTTCAATGGCTCTATATG
AATTAGCTGTTTTTGATCCCTCCGATCCAGTTCTTGATCCAATGTGGAGA
CAAGGCATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCGATTC
ATGGGGTGGTTGGAGTATTACAGGGGGGACAGTAACGAATCCGGGTATTT
GGAGTTACGAAGGTGTAGCGGGGGCACATATTGTGTTTTCCGGATTGTGC
TTCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGCAATATTTGT
TGATGACCGTACAGGAAAACGTTCTTTGGATTTGCCTAAAATCTTTGGAA
TTCATTTATTTCTCTCAGGAGTGGCTTGCTTTGGTTTTGGGACATTTCAT
GTAACAGGATTGTATGGTCCTGGAATATGGGTGTCTGATCCGTATGGACT
AACTGGAAAGGTACAATCTGTAAATCCAGCATGGGGTGTGGAAGGTTTTG
ATCCTTTTGTTCCAGGAGGAATAGCCTCTCATCATATTGCGGCAGGGACA
TTGGGCATATTAGCAGGCTTATTCCATCTCAGTGTCCGCCCGCCACAACG
CTTATACAAAGGATTACGTATGGGCAATATTGAAACCGTTCTTTCCAGCA
GCATCGCTGCTGTCTTTTTTGCAGCGTTTGTTGTTGCTGGAACTATGT
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