CK934608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SOLLC (Photosystem II CP43 chlorophyll apoprotein OS=Solanum lycopersicum GN=psbC PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SOLBU (Photosystem II CP43 chlorophyll apoprotein OS=Solanum bulbocastanum GN=psbC PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LACSA (Photosystem II CP43 chlorophyll apoprotein OS=Lactuca sativa GN=psbC PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_ATRBE (Photosystem II CP43 chlorophyll apoprotein OS=Atropa belladonna GN=psbC PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_AETCO (Photosystem II CP43 chlorophyll apoprotein OS=Aethionema cordifolium GN=psbC PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 7.266e-12 Identity = 64/240 (26.67%), Postives = 101/240 (42.08%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSI-TGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + L GW I GG V + + GV H++ S + I+H + + K + I GIHL L GV F F + G+Y PG D +T S + +G PF G I H+ G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATL-------GWGIGPGGEVIDTFPYFVSGV--LHVISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_SPIOL (Photosystem II CP43 chlorophyll apoprotein OS=Spinacia oleracea GN=psbC PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G + IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNVTLSPSIIFGCLLKSPFGGEGWIVSVDDLEDIIGGHVWIGVICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PELHO (Photosystem II CP43 chlorophyll apoprotein OS=Pelargonium hortorum GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/241 (26.56%), Postives = 100/241 (41.49%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F FG + T G G D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGFILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALSFGGVYDTWAPGGG----DVRKITNLTLSPSVLFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PANGI (Photosystem II CP43 chlorophyll apoprotein OS=Panax ginseng GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGGMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_OLIPU (Photosystem II CP43 chlorophyll apoprotein OS=Olimarabidopsis pumila GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L GV F F + G+Y PG D +T S + +G PF G I H+ G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHVISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_NYMAL (Photosystem II CP43 chlorophyll apoprotein OS=Nymphaea alba GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRRITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256 The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 218
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bpback to top |