CK934608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_NUPAD (Photosystem II CP43 chlorophyll apoprotein OS=Nuphar advena GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRRITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LOTJA (Photosystem II CP43 chlorophyll apoprotein OS=Lotus japonicus GN=psbC PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 20 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKASYFGGIYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 244
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LIRTU (Photosystem II CP43 chlorophyll apoprotein OS=Liriodendron tulipifera GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/241 (26.56%), Postives = 101/241 (41.91%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F FG + T G G D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LEPVR (Photosystem II CP43 chlorophyll apoprotein OS=Lepidium virginicum GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L GV F F + G+Y PG D +T S + +G PF G I H+ G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHVISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_IPOPU (Photosystem II CP43 chlorophyll apoprotein OS=Ipomoea purpurea GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVLDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_GNEPA (Photosystem II CP43 chlorophyll apoprotein OS=Gnetum parvifolium GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 99/239 (41.42%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAGSM L+E+A F P PM+ QG+ ++P + LG WG GG + + + GV H++ S + I+H + + T K + I GIHL L G F F G+Y PG D +T S N +G PF G + H G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVSHAGLIVFWAGSMNLFEVAHFIPE----KPMYEQGLILLPHLATLG----WGVG--PGGEIVDTFPYFVSGV--LHLISSAVLGFGGIYHALIGPETLEESFPFFGYTWKDRNKMTTILGIHLILLGAGAFLLVFKALFFGGIYDTWAPG--GGDVRKITNLTLSPNIIFGYLLKSPFGGEGWIVSVDNLEDLIGGHFWLGSICIFGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_DRIGR (Photosystem II CP43 chlorophyll apoprotein OS=Drimys granadensis GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 65/241 (26.97%), Postives = 101/241 (41.91%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F FG + T G G D +T S + +G PF G I HI G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHIWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CYCTA (Photosystem II CP43 chlorophyll apoprotein OS=Cycas taitungensis GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 66/248 (26.61%), Postives = 102/248 (41.13%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVDDRTGKRSL-----------DLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + T + SL + I GIHL L GV F FG + T G G D +T S + +G PF G I H+ G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYH-------ALIGPETLEESLPFFGYVWKDRSKMTTILGIHLILLGVGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPSVIFGYLLESPFGGEGWIVSVDNLEDIIGGHVWLGSICIFGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUSGR (Photosystem II CP43 chlorophyll apoprotein OS=Cuscuta gronovii GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 62/239 (25.94%), Postives = 103/239 (43.10%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYW----DLAIFVDDRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG + + + GV H++ S + I+H + + + + K + I GIHL L G+ F F + G+Y PG D +T S + +G PF G I H+ G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFGPE----KPMYEQGLILLPHLATLG----WGVG--PGGEIIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPEIIEESFPLFRYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGFLLKSPFGGDGWIVSVDDLEDIIGGHVWVGSICIFGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_COFAR (Photosystem II CP43 chlorophyll apoprotein OS=Coffea arabica GN=psbC PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12 Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T S +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPGIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256 The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 218
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bpback to top |