CK934608

Overview
NameCK934608
Unique NameCK934608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_NUPAD (Photosystem II CP43 chlorophyll apoprotein OS=Nuphar advena GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRRITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LOTJA (Photosystem II CP43 chlorophyll apoprotein OS=Lotus japonicus GN=psbC PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   20 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKASYFGGIYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 244          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LIRTU (Photosystem II CP43 chlorophyll apoprotein OS=Liriodendron tulipifera GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/241 (26.56%), Postives = 101/241 (41.91%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F        FG  + T   G G    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_LEPVR (Photosystem II CP43 chlorophyll apoprotein OS=Lepidium virginicum GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L GV  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHVISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_IPOPU (Photosystem II CP43 chlorophyll apoprotein OS=Ipomoea purpurea GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 102/239 (42.68%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVLDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGLGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIVGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_GNEPA (Photosystem II CP43 chlorophyll apoprotein OS=Gnetum parvifolium GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 99/239 (41.42%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAGSM L+E+A F P      PM+ QG+ ++P +  LG    WG     GG + +   +   GV   H++ S +     I+H +     +         T K    +  I GIHL L G   F   F      G+Y    PG    D   +T    S N  +G     PF   G          +   H   G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVSHAGLIVFWAGSMNLFEVAHFIPE----KPMYEQGLILLPHLATLG----WGVG--PGGEIVDTFPYFVSGV--LHLISSAVLGFGGIYHALIGPETLEESFPFFGYTWKDRNKMTTILGIHLILLGAGAFLLVFKALFFGGIYDTWAPG--GGDVRKITNLTLSPNIIFGYLLKSPFGGEGWIVSVDNLEDLIGGHFWLGSICIFGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_DRIGR (Photosystem II CP43 chlorophyll apoprotein OS=Drimys granadensis GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 65/241 (26.97%), Postives = 101/241 (41.91%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F        FG  + T   G G    D   +T    S +  +G     PF   G          I   HI  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPSVIFGYLLKSPFGGEGWIVSVDDLEDIIGGHIWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CYCTA (Photosystem II CP43 chlorophyll apoprotein OS=Cycas taitungensis GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 66/248 (26.61%), Postives = 102/248 (41.13%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVDDRTGKRSL-----------DLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H         +   T + SL            +  I GIHL L GV  F        FG  + T   G G    D   +T    S +  +G     PF   G          I   H+  G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVVDTFPYFVSGV--LHLISSAVLGFGGIYH-------ALIGPETLEESLPFFGYVWKDRSKMTTILGIHLILLGVGAFLLVLKALYFGGVYDTWAPGGG----DVRKITNLTLSPSVIFGYLLESPFGGEGWIVSVDNLEDIIGGHVWLGSICIFGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUSGR (Photosystem II CP43 chlorophyll apoprotein OS=Cuscuta gronovii GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 62/239 (25.94%), Postives = 103/239 (43.10%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYW----DLAIFVDDRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG + +   +   GV   H++ S +     I+H +      + +  +     K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S +  +G     PF   G          I   H+  G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFGPE----KPMYEQGLILLPHLATLG----WGVG--PGGEIIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPEIIEESFPLFRYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPSIIFGFLLKSPFGGDGWIVSVDDLEDIIGGHVWVGSICIFGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_COFAR (Photosystem II CP43 chlorophyll apoprotein OS=Coffea arabica GN=psbC PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 64/239 (26.78%), Postives = 101/239 (42.26%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    S    +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLSPGIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PSBC_NUPAD9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Nuph... [more]
PSBC_LOTJA9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Lotu... [more]
PSBC_LIRTU9.490e-1226.56Photosystem II CP43 chlorophyll apoprotein OS=Liri... [more]
PSBC_LEPVR9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Lepi... [more]
PSBC_IPOPU9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Ipom... [more]
PSBC_GNEPA9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Gnet... [more]
PSBC_DRIGR9.490e-1226.97Photosystem II CP43 chlorophyll apoprotein OS=Drim... [more]
PSBC_CYCTA9.490e-1226.61Photosystem II CP43 chlorophyll apoprotein OS=Cyca... [more]
PSBC_CUSGR9.490e-1225.94Photosystem II CP43 chlorophyll apoprotein OS=Cusc... [more]
PSBC_COFAR9.490e-1226.78Photosystem II CP43 chlorophyll apoprotein OS=Coff... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bp
GGGGCTTCTCTTTTTTCCTACGAACCGAACTCTTCCATTATTACTAAAAG
AATAGAACAAATATTAATATTAATCCCTTTTTCGAGATAATCCCCTGAAA
AAAGGGGTACATAGCATAGTTTTTTTCAATGCAATAAAGTTACATAGTGT
CTATTTTTTATTAATAAAGGGGTAGTCCCATGGGTTTGCCTTGGTATCGT
GTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTGCTGTCCATAT
AATGCATACAGCCCTGGTTGCGGGTTGGGCCGGTTCAATGGCTCTATATG
AATTAGCTGTTTTTGATCCCTCCGATCCAGTTCTTGATCCAATGTGGAGA
CAAGGCATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCGATTC
ATGGGGTGGTTGGAGTATTACAGGGGGGACAGTAACGAATCCGGGTATTT
GGAGTTACGAAGGTGTAGCGGGGGCACATATTGTGTTTTCCGGATTGTGC
TTCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGCAATATTTGT
TGATGACCGTACAGGAAAACGTTCTTTGGATTTGCCTAAAATCTTTGGAA
TTCATTTATTTCTCTCAGGAGTGGCTTGCTTTGGTTTTGGGACATTTCAT
GTAACAGGATTGTATGGTCCTGGAATATGGGTGTCTGATCCGTATGGACT
AACTGGAAAGGTACAATCTGTAAATCCAGCATGGGGTGTGGAAGGTTTTG
ATCCTTTTGTTCCAGGAGGAATAGCCTCTCATCATATTGCGGCAGGGACA
TTGGGCATATTAGCAGGCTTATTCCATCTCAGTGTCCGCCCGCCACAACG
CTTATACAAAGGATTACGTATGGGCAATATTGAAACCGTTCTTTCCAGCA
GCATCGCTGCTGTCTTTTTTGCAGCGTTTGTTGTTGCTGGAACTATGT
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