CK934608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUSRE (Photosystem II CP43 chlorophyll apoprotein OS=Cuscuta reflexa GN=psbC PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.710e-11 Identity = 62/248 (25.00%), Postives = 102/248 (41.13%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGP-----------------GIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F FG + T G G + P+G G + S V+ + + G H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALDFGGVYDTWAPGGGDVRKIANLTLSPSLIFGYLLKSPFGGEGWIVS------VDDLEDLIGG-----HVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_ANTFO (Photosystem II CP43 chlorophyll apoprotein OS=Anthoceros formosae GN=psbC PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.710e-11 Identity = 64/241 (26.56%), Postives = 100/241 (41.49%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F FG + T G G D +T S + +G PF G I H+ G + IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHSLIGPETLEESFPFFGYVWKDKNKMTTILGIHLVLLGLGAFLLVFKASFFGGVYDTWAPGGG----DVREITNLTLSPSIIFGYLLKSPFGGEGWIVSVDNLEDIIGGHVWLGLICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PCBE_PROMA (Divinyl chlorophyll a/b light-harvesting protein pcbE OS=Prochlorococcus marinus GN=pcbE PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.710e-11 Identity = 81/270 (30.00%), Postives = 109/270 (40.37%), Query Frame = 3 Query: 192 WYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGI-TDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYW------DLAIFVDDRTGKRSL-------DLPK----IFGIHLFLSGVACFGFGTF-HVTGLYGPGI----WVSDPYGLTG---------KVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSI 905 W+ ++VV N R I H+ HT L+A AG+ L+ELA F+P PM QGM IP + LGI D G W TG V GI+ H++ S + LA + H V + +F D R R D P I G HL GVA F + V G+Y P I V+ LT ++ S+ G F F G + HIA +G +KG + + E VLS S+ Sbjct: 13 WWVGNSVVTNKSSRFIGSHVAHTGLIAFTAGANTLWELARFNPD----IPMGHQGMVSIPHLASLGIGFDQAGAW--TGQDVAFVGIF--------HLICSFVYALAGLLHSVIFSEDTQNSSGLFADGRPEHRQAARFKLEWDNPDNQTFILGHHLVFFGVANIWFVEWARVHGIYDPAIEAIRQVNYNLDLTQIWNHQFDFIQIDSLEDVMGGHAFLAFFQIGGGAFHIATKQIGTYTN------------FKGAGLLSAEAVLSWSL 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_TRACE (Photosystem II CP43 chlorophyll apoprotein OS=Trachelium caeruleum GN=psbC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11 Identity = 62/239 (25.94%), Postives = 101/239 (42.26%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D ++ S + +G PF G I H+ G++ I G++H+ +P Sbjct: 20 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVLDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKISNLTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 244
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PSEAK (Photosystem II CP43 chlorophyll apoprotein OS=Pseudendoclonium akinetum GN=psbC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11 Identity = 59/237 (24.89%), Postives = 98/237 (41.35%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLYGP-GIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG GG V + + GV H++ S + ++H + + K + I GIHL + G + + + GL+ P + D +T S +G PF G + HI GTL IL G++H+ +P Sbjct: 20 GFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFIPE----KPMYEQGLILLPHLASLGYGVG------PGGEVVDTFPYFVSGV--LHLISSAVLGFGGVYHSLIGPETLEESFPFFGYVWKDKNKMSTILGIHLVILGFGAWLLVWKAMYFGGLFDPWSVGGGDVRVITNPTISPGIIFGYLLKSPFGGDGWIVSVDNMEDVVGGHIWIGTLEILGGIWHILTKP 244
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_DAUCA (Photosystem II CP43 chlorophyll apoprotein OS=Daucus carota GN=psbC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11 Identity = 62/239 (25.94%), Postives = 100/239 (41.84%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F F + G+Y PG D +T + + +G PF G I H+ G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGGMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLNPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUSEX (Photosystem II CP43 chlorophyll apoprotein OS=Cuscuta exaltata GN=psbC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11 Identity = 63/241 (26.14%), Postives = 100/241 (41.49%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F FG + T G G D + S + +G PF G I H+ G++ IL G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGG----DVRKIANLTLSPSLIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CITSI (Photosystem II CP43 chlorophyll apoprotein OS=Citrus sinensis GN=psbC PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 8.034e-11 Identity = 62/238 (26.05%), Postives = 100/238 (42.02%), Query Frame = 3 Query: 183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSV-----NPAWGVEGFDPFVPG--GIASHHIAAGTLGILAGLFHLSVRP 842 G W+ + ++N G+L+ H+ H L+ WAG+M L+E+A F P PM+ QG+ ++P + LG WG GG V + + GV H++ S + I+H + + K + I GIHL L G+ F FG + T G G + LT + +G EG+ V I H+ G++ I G++H+ +P Sbjct: 32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGEMLRKITNLTLSPSVIFGYLLKSFFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 257 The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 218
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bpback to top |