CK934608

Overview
NameCK934608
Unique NameCK934608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUSRE (Photosystem II CP43 chlorophyll apoprotein OS=Cuscuta reflexa GN=psbC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.710e-11
Identity = 62/248 (25.00%), Postives = 102/248 (41.13%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGP-----------------GIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F        FG  + T   G                  G  +  P+G  G + S      V+  +  + G     H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALDFGGVYDTWAPGGGDVRKIANLTLSPSLIFGYLLKSPFGGEGWIVS------VDDLEDLIGG-----HVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_ANTFO (Photosystem II CP43 chlorophyll apoprotein OS=Anthoceros formosae GN=psbC PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.710e-11
Identity = 64/241 (26.56%), Postives = 100/241 (41.49%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F        FG  + T   G G    D   +T    S +  +G     PF   G          I   H+  G + IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHSLIGPETLEESFPFFGYVWKDKNKMTTILGIHLVLLGLGAFLLVFKASFFGGVYDTWAPGGG----DVREITNLTLSPSIIFGYLLKSPFGGEGWIVSVDNLEDIIGGHVWLGLICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PCBE_PROMA (Divinyl chlorophyll a/b light-harvesting protein pcbE OS=Prochlorococcus marinus GN=pcbE PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.710e-11
Identity = 81/270 (30.00%), Postives = 109/270 (40.37%), Query Frame = 3
Query:  192 WYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGI-TDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYW------DLAIFVDDRTGKRSL-------DLPK----IFGIHLFLSGVACFGFGTF-HVTGLYGPGI----WVSDPYGLTG---------KVQSVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSI 905
            W+  ++VV N   R I  H+ HT L+A  AG+  L+ELA F+P      PM  QGM  IP +  LGI  D  G W  TG  V   GI+        H++ S +  LA + H V +         +F D R   R         D P     I G HL   GVA   F  +  V G+Y P I     V+    LT          ++ S+    G   F  F   G  + HIA   +G                +KG  + + E VLS S+
Sbjct:   13 WWVGNSVVTNKSSRFIGSHVAHTGLIAFTAGANTLWELARFNPD----IPMGHQGMVSIPHLASLGIGFDQAGAW--TGQDVAFVGIF--------HLICSFVYALAGLLHSVIFSEDTQNSSGLFADGRPEHRQAARFKLEWDNPDNQTFILGHHLVFFGVANIWFVEWARVHGIYDPAIEAIRQVNYNLDLTQIWNHQFDFIQIDSLEDVMGGHAFLAFFQIGGGAFHIATKQIGTYTN------------FKGAGLLSAEAVLSWSL 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_TRACE (Photosystem II CP43 chlorophyll apoprotein OS=Trachelium caeruleum GN=psbC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11
Identity = 62/239 (25.94%), Postives = 101/239 (42.26%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   ++    S +  +G     PF   G          I   H+  G++ I  G++H+  +P
Sbjct:   20 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVLDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKISNLTLSPSILFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 244          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_PSEAK (Photosystem II CP43 chlorophyll apoprotein OS=Pseudendoclonium akinetum GN=psbC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11
Identity = 59/237 (24.89%), Postives = 98/237 (41.35%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLYGP-GIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG           GG V +   +   GV   H++ S +     ++H +     +           K    +  I GIHL + G   +   +   +  GL+ P  +   D   +T    S    +G     PF   G          +   HI  GTL IL G++H+  +P
Sbjct:   20 GFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFIPE----KPMYEQGLILLPHLASLGYGVG------PGGEVVDTFPYFVSGV--LHLISSAVLGFGGVYHSLIGPETLEESFPFFGYVWKDKNKMSTILGIHLVILGFGAWLLVWKAMYFGGLFDPWSVGGGDVRVITNPTISPGIIFGYLLKSPFGGDGWIVSVDNMEDVVGGHIWIGTLEILGGIWHILTKP 244          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_DAUCA (Photosystem II CP43 chlorophyll apoprotein OS=Daucus carota GN=psbC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11
Identity = 62/239 (25.94%), Postives = 100/239 (41.84%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF--GFGTFHVTGLY---GPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F   F   +  G+Y    PG    D   +T    + +  +G     PF   G          I   H+  G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGGMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPG--GGDVRKITNLTLNPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CUSEX (Photosystem II CP43 chlorophyll apoprotein OS=Cuscuta exaltata GN=psbC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.151e-11
Identity = 63/241 (26.14%), Postives = 100/241 (41.49%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSVNPAWGVEGFDPFVPGG----------IASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F        FG  + T   G G    D   +     S +  +G     PF   G          I   H+  G++ IL G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVLKALYFGGVYDTWAPGGG----DVRKIANLTLSPSLIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTKP 256          
BLAST of CK934608 vs. ExPASy Swiss-Prot
Match: PSBC_CITSI (Photosystem II CP43 chlorophyll apoprotein OS=Citrus sinensis GN=psbC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.034e-11
Identity = 62/238 (26.05%), Postives = 100/238 (42.02%), Query Frame = 3
Query:  183 GLPWYRVHTVVLNDPGRLIAVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITDSWGGWSITGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLAIFVD----DRTGKRSLDLPKIFGIHLFLSGVACF-------GFGTFHVTGLYGPGIWVSDPYGLTGKVQSV-----NPAWGVEGFDPFVPG--GIASHHIAAGTLGILAGLFHLSVRP 842
            G  W+  +  ++N  G+L+  H+ H  L+  WAG+M L+E+A F P      PM+ QG+ ++P +  LG    WG     GG V +   +   GV   H++ S +     I+H +     +           K    +  I GIHL L G+  F        FG  + T   G G  +     LT     +        +G EG+   V     I   H+  G++ I  G++H+  +P
Sbjct:   32 GFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPE----KPMYEQGLILLPHLATLG----WGVG--PGGEVIDTFPYFVSGV--LHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGEMLRKITNLTLSPSVIFGYLLKSFFGGEGWIVSVDDLEDIIGGHVWLGSICIFGGIWHILTKP 257          
The following BLAST results are available for this feature:
BLAST of CK934608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
PSBC_CUSRE4.710e-1125.00Photosystem II CP43 chlorophyll apoprotein OS=Cusc... [more]
PSBC_ANTFO4.710e-1126.56Photosystem II CP43 chlorophyll apoprotein OS=Anth... [more]
PCBE_PROMA4.710e-1130.00Divinyl chlorophyll a/b light-harvesting protein p... [more]
PSBC_TRACE6.151e-1125.94Photosystem II CP43 chlorophyll apoprotein OS=Trac... [more]
PSBC_PSEAK6.151e-1124.89Photosystem II CP43 chlorophyll apoprotein OS=Pseu... [more]
PSBC_DAUCA6.151e-1125.94Photosystem II CP43 chlorophyll apoprotein OS=Dauc... [more]
PSBC_CUSEX6.151e-1126.14Photosystem II CP43 chlorophyll apoprotein OS=Cusc... [more]
PSBC_CITSI8.034e-1126.05Photosystem II CP43 chlorophyll apoprotein OS=Citr... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934608 ID=CK934608; Name=CK934608; organism=Citrus sinensis; type=EST; length=948bp
GGGGCTTCTCTTTTTTCCTACGAACCGAACTCTTCCATTATTACTAAAAG
AATAGAACAAATATTAATATTAATCCCTTTTTCGAGATAATCCCCTGAAA
AAAGGGGTACATAGCATAGTTTTTTTCAATGCAATAAAGTTACATAGTGT
CTATTTTTTATTAATAAAGGGGTAGTCCCATGGGTTTGCCTTGGTATCGT
GTTCATACCGTCGTATTGAATGATCCCGGTCGTTTGATTGCTGTCCATAT
AATGCATACAGCCCTGGTTGCGGGTTGGGCCGGTTCAATGGCTCTATATG
AATTAGCTGTTTTTGATCCCTCCGATCCAGTTCTTGATCCAATGTGGAGA
CAAGGCATGTTCGTTATACCCTTCATGACTCGTTTAGGAATAACCGATTC
ATGGGGTGGTTGGAGTATTACAGGGGGGACAGTAACGAATCCGGGTATTT
GGAGTTACGAAGGTGTAGCGGGGGCACATATTGTGTTTTCCGGATTGTGC
TTCTTGGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGCAATATTTGT
TGATGACCGTACAGGAAAACGTTCTTTGGATTTGCCTAAAATCTTTGGAA
TTCATTTATTTCTCTCAGGAGTGGCTTGCTTTGGTTTTGGGACATTTCAT
GTAACAGGATTGTATGGTCCTGGAATATGGGTGTCTGATCCGTATGGACT
AACTGGAAAGGTACAATCTGTAAATCCAGCATGGGGTGTGGAAGGTTTTG
ATCCTTTTGTTCCAGGAGGAATAGCCTCTCATCATATTGCGGCAGGGACA
TTGGGCATATTAGCAGGCTTATTCCATCTCAGTGTCCGCCCGCCACAACG
CTTATACAAAGGATTACGTATGGGCAATATTGAAACCGTTCTTTCCAGCA
GCATCGCTGCTGTCTTTTTTGCAGCGTTTGTTGTTGCTGGAACTATGT
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