CK934616

Overview
NameCK934616
Unique NameCK934616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 38/127 (29.92%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   29 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 409
            KG ++GIR  ++DG D   +Y   +   E       PV++E  TYR   HS SD + KYR+ +E+  +K ER  + R R  +    + +E++   +  S+++ +  A++ +E +  P+  EL++D+Y
Sbjct:  201 KGESFGIRGFQLDGMDFEEMYNGTKQVAEYVRENSFPVILEVKTYRYRGHSMSDPA-KYRSKEEVAKYK-ERDTLVRIRQIILDNKYATEEDLKAIERSVQEVIKVAVEFSENSPLPSEDELYTDIY 325          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPAT_RAT (Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial OS=Rattus norvegicus GN=Pdha2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 42/141 (29.79%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   35 RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY-DVPPSNLAEQEKQLK 454
            + + I  +RV+G D L+V  A + A +   S K P+++E  TYR   HS SD    YRT +E++  +++  P+   R  +      S +E  E+ + +KK++ +A Q A    +P + +L + +Y   PP  +    K LK
Sbjct:  246 KGFVIPGLRVNGMDILSVREATKFAADHCRSGKGPIVMELQTYRYHGHSMSDPGISYRTREEVQNVRSKSDPIMLLRERMISNNLSSVEELKEIDADVKKEVEEAAQFATTDPEPPLEDLANYLYHQNPPFEVRGAHKWLK 386          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODBA_BACSU (2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis GN=bfmBAA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 40/123 (32.52%), Postives = 65/123 (52.85%), Query Frame = 2
Query:   41 YGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 409
            YG+  + V+GND L VY AV+ ARE A   + P L+E ++YR+  HS+ DD + YR  +E+E  K +  P+  ++ +++  G  S++ E  +   I   + +A   AE     A       VY
Sbjct:  207 YGMPGVTVNGNDPLEVYQAVKEARERARRGEGPTLIETISYRLTPHSSDDDDSSYRGREEVEEAK-KSDPLLTYQAYLKETGLLSDEIEQTMLDEIMAIVNEATDEAENAPYAAPESALDYVY 328          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 39/127 (30.71%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   29 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVY 409
            KG ++GI+  ++DG D   +Y   + A E       P+++E  TYR   HS SD + KYR+ +E+E +K ER P+   R  +    + +E +   +  S+K+ + +A++ +E +  P   EL++ VY
Sbjct:  201 KGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVKTYRYRGHSMSDPA-KYRSKEEVEQYK-ERDPLVIIRKTILDNKYVTEADLKAIEQSVKEIVKEAVEFSENSPLPDEGELYTQVY 325          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_RAT (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 2
Query:   47 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 421
            I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  249 IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_PONAB (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Pongo abelii GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 2
Query:   47 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 421
            I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  249 IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_MOUSE (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 2
Query:   47 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 421
            I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  249 IPGLRVDGMDILCVREATKFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_MACFA (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Macaca fascicularis GN=PDHA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 2
Query:   47 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 421
            I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  249 IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_HUMAN (Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial OS=Homo sapiens GN=PDHA1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 40/125 (32.00%), Postives = 62/125 (49.60%), Query Frame = 2
Query:   47 IRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPP 421
            I  +RVDG D L V  A + A     S K P+L+E  TYR   HS SD    YRT +EI+  +++  P+   ++ +      S +E  E+   ++K++  A Q A    +P + EL   +Y   P
Sbjct:  249 IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 373          
BLAST of CK934616 vs. ExPASy Swiss-Prot
Match: ODPA_PORYE (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 41/122 (33.61%), Postives = 67/122 (54.92%), Query Frame = 2
Query:   29 KGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPVNRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITEL 394
            K  A+G+  I VDG D LAV  A + A + A     P L+EALTYR   HS +D   + R+  E E W   R P+ + + ++      +  E  E+++++K +L QA++ A  + +P ++EL
Sbjct:  219 KAEAFGLPGIEVDGMDVLAVRQAAKQAVQRARQGDGPTLIEALTYRFRGHSLADPD-ELRSRQEKEAW-VARDPIKKLKKYILDNEIANIGELNEIQNAVKTELEQAVKFAISSPEPNMSEL 338          
The following BLAST results are available for this feature:
BLAST of CK934616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ODPA_RICTY2.241e-1129.92Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPAT_RAT3.823e-1129.79Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODBA_BACSU3.823e-1132.522-oxoisovalerate dehydrogenase subunit alpha OS=Ba... [more]
ODPA_RICCN4.993e-1130.71Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RAT4.993e-1132.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PONAB4.993e-1132.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MOUSE4.993e-1132.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_MACFA4.993e-1132.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_HUMAN4.993e-1132.00Pyruvate dehydrogenase E1 component subunit alpha,... [more]
ODPA_PORYE8.517e-1133.61Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934616 ID=CK934616; Name=CK934616; organism=Citrus sinensis; type=EST; length=704bp
GGGATTTCGAAGCGGTGGTATTGTTGTTAAGGGTCGTGCATATGGTATCC
GAAGCATACGAGTAGATGGAAATGATGCACTCGCTGTTTATACCGCAGTT
CAGGCAGCTCGTGAAATGGCTATCAGTGAAAAGAGACCTGTGTTAGTAGA
GGCCCTTACATATCGAGTAGGACATCACTCAACCTCGGATGATTCCACCA
AATACCGAACACTTGATGAAATCGAGTACTGGAAAACAGAACGAAGTCCT
GTCAATAGATTTAGGAATTGGGTGGAAAGGCAAGGCTGGTGGAGTGAGCA
AGAAGAAACCGAGCTTCGAAGTAGCATCAAGAAACAGTTGTTGCAAGCAA
TTCAAGTTGCAGAGAAAACAGAAAAGCCGGCGATTACAGAACTGTTCTCC
GACGTATATGATGTTCCCCCATCAAACCTTGCTGAGCAAGAGAAACAGCT
GAAAGAAATTATCCAAAAATATCCACAAGACTATCCCACTGATGTTCCTG
TATAGATTTCACGTGGCTACTTCAATAAAATGTGTAGAATAAAGGGGGGA
AACGGAAAGATAAAAAATAAAACTCCTGAAAACTCCATATAAATGAAAAA
TGTAGCGTCAATAAGTTTCTACATGCCATGTACATTTTGATAGTAATAAA
GCAATCTATACGTAATTATAGTATCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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