CK934622

Overview
NameCK934622
Unique NameCK934622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_WELMI (Photosystem II reaction center protein K OS=Welwitschia mirabilis GN=psbK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.148e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  199 LMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            L ++  N+ +  S+F+  KLPEAYA  +PIVDVMPV+PV FFLLAFVWQAAVSFR
Sbjct:    2 LNFLLQNTFVLWSNFILCKLPEAYAVFDPIVDVMPVIPVFFFLLAFVWQAAVSFR 56          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_PINKO (Photosystem II reaction center protein K OS=Pinus koraiensis GN=psbK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.064e-13
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 1
Query:  208 ICLNSA-LYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            ICL+ A ++S++  F KLPEAYA  +PIVDVMP++PVL FLLAFVWQAAVSFR
Sbjct:    7 ICLDDAFIHSNNPFFGKLPEAYAIFDPIVDVMPIIPVLSFLLAFVWQAAVSFR 59          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_MARPO (Photosystem II reaction center protein K OS=Marchantia polymorpha GN=psbK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.390e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1
Query:  208 ICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            I L +A Y +   FAKLPEAY+  +PIVDVMP++P+ FFLLAFVWQA+VSFR
Sbjct:    4 IYLENAFYLNGITFAKLPEAYSIFDPIVDVMPIIPLFFFLLAFVWQASVSFR 55          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_CHAGL (Photosystem II reaction center protein K OS=Chaetosphaeridium globosum GN=psbK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            MLN+ S  +   +S+ +S +FL AKLPEAYA  +PIVDVMP++PV F LLAFVWQAAVSFR
Sbjct:    1 MLNMISTFFD--SSSNFSEAFL-AKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQAAVSFR 58          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_ADICA (Photosystem II reaction center protein K OS=Adiantum capillus-veneris GN=psbK PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.044e-13
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 1
Query:  208 ICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            I L ++L+    L AKLPEAYA  +PIVDVMPV+PV F LLAFVWQAAVSFR
Sbjct:    7 IYLENSLHFGDALLAKLPEAYAIFDPIVDVMPVIPVFFLLLAFVWQAAVSFR 58          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_ANTFO (Photosystem II reaction center protein K OS=Anthoceros formosae GN=psbK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.281e-13
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  199 LMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            + YI L +    SS +  KLPEAYA  +PIVDVMP++P+ FFLLAFVWQA+VSFR
Sbjct:    1 MFYIHLENTFDLSSTILVKLPEAYAIFDPIVDVMPIIPLFFFLLAFVWQASVSFR 55          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_PSINU (Photosystem II reaction center protein K OS=Psilotum nudum GN=psbK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.898e-13
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  172 MFVMLNIF-SLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            M V+ N++ S ++  +N         FAKLPEAYA  +PIVDVMP++PV FFLLAFVWQAAVSFR
Sbjct:    1 MLVISNVYPSNLFTLINP-------FFAKLPEAYAIFDPIVDVMPIIPVFFFLLAFVWQAAVSFR 58          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_PINTH (Photosystem II reaction center protein K OS=Pinus thunbergii GN=psbK PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.007e-12
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  181 MLNIFSLMYICLNSA-LYSSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            M NIF      L+ A ++S++  F KLPEAYA  +PIVDVMP++PVL FLLAFVWQAAVSFR
Sbjct:    1 MFNIF------LDDAFIHSNNPFFGKLPEAYAISDPIVDVMPIIPVLSFLLAFVWQAAVSFR 56          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_STIHE (Photosystem II reaction center protein K OS=Stigeoclonium helveticum GN=psbK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.471e-12
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:  244 LFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            +FAKLPEAYA  +PIVDV+PV+PVLF LLAFVWQAAVSFR
Sbjct:    7 IFAKLPEAYAPFDPIVDVLPVIPVLFLLLAFVWQAAVSFR 46          
BLAST of CK934622 vs. ExPASy Swiss-Prot
Match: PSBK_STAPU (Photosystem II reaction center protein K OS=Staurastrum punctulatum GN=psbK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.960e-12
Identity = 31/44 (70.45%), Postives = 37/44 (84.09%), Query Frame = 1
Query:  232 SSSFLFAKLPEAYAFLNPIVDVMPVMPVLFFLLAFVWQAAVSFR 363
            + + + AKLPEAYA  +PIVDVMP++PV F LLAFVWQAAVSFR
Sbjct:   15 NGTVILAKLPEAYAIFDPIVDVMPIIPVFFLLLAFVWQAAVSFR 58          
The following BLAST results are available for this feature:
BLAST of CK934622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PSBK_WELMI8.148e-1465.45Photosystem II reaction center protein K OS=Welwit... [more]
PSBK_PINKO1.064e-1369.81Photosystem II reaction center protein K OS=Pinus ... [more]
PSBK_MARPO1.390e-1365.38Photosystem II reaction center protein K OS=Marcha... [more]
PSBK_CHAGL4.044e-1363.93Photosystem II reaction center protein K OS=Chaeto... [more]
PSBK_ADICA4.044e-1369.23Photosystem II reaction center protein K OS=Adiant... [more]
PSBK_ANTFO5.281e-1361.82Photosystem II reaction center protein K OS=Anthoc... [more]
PSBK_PSINU6.898e-1358.46Photosystem II reaction center protein K OS=Psilot... [more]
PSBK_PINTH2.007e-1262.90Photosystem II reaction center protein K OS=Pinus ... [more]
PSBK_STIHE4.471e-1282.50Photosystem II reaction center protein K OS=Stigeo... [more]
PSBK_STAPU9.960e-1270.45Photosystem II reaction center protein K OS=Staura... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004228_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934622 ID=CK934622; Name=CK934622; organism=Citrus sinensis; type=EST; length=440bp
GGGGAAAGTATGATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTG
TTTTGATTGGGTCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTT
TTCTTCATTTTTATCTTATATCAATAAGATATTAATAACTCAATCAAAAT
AAAATTATCTCCAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTT
AATGTATATCTGCCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCG
CTAAATTACCCGAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATG
CCAGTAATGCCTGTTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGC
TGTAAGTTTTCGATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATT
TATTCTAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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