CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FIGL1_HUMAN (Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.300e-11
Identity = 34/93 (36.56%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  609 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 887
            L PK+   +    ++  P V + D+ G +     ++E+V  PML P+ F  L   PPKG+L +GPPGTGKTL+ + +A+++ A F  +  S L
Sbjct:  379 LEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 470          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P+VT++D+GG      ++ + +++P+ HPE F   G+    G+L YGPPGTGKTLLA+A+A+     F  V G EL+
Sbjct:  697 PNVTWDDIGGMDVVKGEIMDTIDMPLKHPELFSS-GMKKRSGILFYGPPGTGKTLLAKAIASNFSLNFFSVKGPELL 772          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 35/86 (40.70%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  633 VTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            VT +    K  V + DV GC E  +++ E V   + +P+K+ +LG   PKG L  GPPGTGKTLLA+A A  +   F+ + GS+ +
Sbjct:  306 VTKLDKNSKNKVFFKDVAGCDEAKQEIMEFVHF-LKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFM 390          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: SPA5L_HUMAN (Spermatogenesis-associated protein 5-like protein 1 OS=Homo sapiens GN=SPATA5L1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  666 VTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 887
            V + ++GG ++   K+++ +E P+  P +FV++G+  PKGVL YGPPG  KT L RA+A      F+ V G++L
Sbjct:  461 VDWEEIGGLEDVKLKLKQSIEWPLKFPWEFVRMGLTQPKGVLLYGPPGCAKTTLVRALATSCHCSFVSVSGADL 534          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  660 PDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P+V ++DVGG     + + E ++LP+  PE F K G+    G+L YGPPGTGKTLLA+A+A      F  V G EL+
Sbjct: 1025 PNVGWDDVGGLTNVKDALVETIQLPLERPELFAK-GMKKRSGILFYGPPGTGKTLLAKAIATEFSLNFFSVKGPELL 1100          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: YJNA_SCHPO (Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe GN=SPCC24B10.10c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 32/81 (39.51%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  636 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLG--IDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRV 872
            + + +  + DV+++D+GG  E + ++ + V  P+ +PE F   G  +  PKG+L YGPPG GKT+LA+A+A ++ A FI V
Sbjct:   76 SQLVLPSEIDVSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKALAKQSQATFINV 156          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  582 RNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            RN++ + I  P             + P+VT++D+GG      ++ + +++P+ HPE F   G+    G+L YGPPGTGKTL+A+A+A      F  V G EL+
Sbjct:  714 RNEFSVSIGAP-------------QIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIATNFSLNFFSVKGPELL 802          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  636 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            T   ++++ DV + DV GC+E   ++ E V   + +P+++  LG   PKG +  GPPGTGKTLLA+A A   +  FI V GSE +
Sbjct:  294 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 377          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  636 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            T   ++++ DV + DV GC+E   ++ E V   + +P+++  LG   PKG +  GPPGTGKTLLA+A A   +  FI V GSE +
Sbjct:  295 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 378          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  636 TMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            T   ++++ DV + DV GC+E   ++ E V   + +P+++  LG   PKG +  GPPGTGKTLLA+A A   +  FI V GSE +
Sbjct:  296 TAKVLKDEIDVKFKDVAGCEEAKLEIMEFVNF-LKNPKQYQDLGAKIPKGAILTGPPGTGKTLLAKATAGEANVPFITVSGSEFL 379          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
FIGL1_HUMAN4.300e-1136.56Fidgetin-like protein 1 OS=Homo sapiens GN=FIGNL1 ... [more]
PEX6_KLULA5.616e-1142.86Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
FTSH3_ORYSJ5.616e-1140.70Cell division protease ftsH homolog 3, mitochondri... [more]
SPA5L_HUMAN7.334e-1140.54Spermatogenesis-associated protein 5-like protein ... [more]
PEX6_PENCH7.334e-1145.45Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
YJNA_SCHPO9.579e-1139.51Uncharacterized AAA domain-containing protein C24B... [more]
PEX6_YEAST9.579e-1134.95Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
AFG32_MOUSE9.579e-1141.18AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_HUMAN9.579e-1141.18AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
AFG32_BOVIN9.579e-1141.18AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
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