CK934699

Overview
NameCK934699
Unique NameCK934699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.136e-30
Identity = 68/155 (43.87%), Postives = 96/155 (61.94%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            PL +     +++ N    + ++      +F+V     V+P DI+ G R  +++    I   LP   D  V  M + + P   Y D+GG KEQI ++RE VELP+  PE F ++GI+PPKGVL YGPPGTGKTLLA+AVA+ T+A F+RV+GSELV
Sbjct:   99 PLIIGTVVDVVDAN----RVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPELFTQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELV 249          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.214e-30
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            PL +   T +I    ++S+ ++      +F+V     + P  ++ G+R  +++    I   LP   D  +  M + E P+ TY ++GG + QIE++RE VELP+  P+ F K+GI PPKGVL YGPPGTGKTLLARAVA++T+A F+RV+GSELV
Sbjct:   74 PLVIGTVTDVI----DNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELV 224          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.053e-29
Identity = 69/155 (44.52%), Postives = 96/155 (61.94%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            PL V   T II    +  + V+      +F+V +   V+PT ++ G+R  +++    I   LP   D  V  M + + P  TY D+GG ++QI ++RE VELPM  P+ F K+GI+PPKGVL YGPPGTGKTLLA+AVA+ T A F+  +GSELV
Sbjct:   74 PLIVGTITDII----DSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPDLFEKIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELV 224          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.681e-29
Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            PL +   T +I+ N    + ++      +F+VG+   ++  +I+ G R  +++    I   LP   D  +  M V E P   Y ++GG ++QI ++RE VELP+  PE F K+GI+PPKGVL +GPPGTGKTLLARAVA++T+A F+RV+GSELV
Sbjct:   74 PLVIGTVTDLIDEN----RVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFRKMGIEPPKGVLLHGPPGTGKTLLARAVAHQTEAHFLRVVGSELV 224          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.681e-29
Identity = 73/176 (41.48%), Postives = 102/176 (57.95%), Query Frame = 3
Query:  390 LVSDKQMMQEEQPLQVARCTKIINPNS---------EDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            L  +K  +Q+E        TK+++P           +D++ V+        +V +   V    ++ G  V ++     I   LP + DP V  M VEE+P V + DVGG +EQI ++ E V LP+ +P  F +LGIDPPKGVL +GPPGTGKTLLA+AVA  T+A FIRV+GSELV
Sbjct:   35 LTKEKISLQKELEYYKNEITKLLSPPYIEAVVLEVIDDNRVVVKSSTGPNLIVNVAAGVDARSLKPGAIVALNNRGSTIVDVLPGRYDPLVKAMEVEERPKVFFKDVGGLEEQIREIYEAVVLPIKNPHLFRELGIDPPKGVLLHGPPGTGKTLLAKAVAGETEATFIRVVGSELV 210          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 4.573e-29
Identity = 60/140 (42.86%), Postives = 93/140 (66.43%), Query Frame = 3
Query:  471 EDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +  ++++      ++VVG  + V  + + +G+RV +D     I   LP ++DP V  M++E+  D+++  VGG  EQI ++REV+ELP+ +PE F+++GI PPKGVL YGPPGTGKTLLARAVA      F++V+ S +V
Sbjct:   64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIV 203          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.972e-29
Identity = 85/246 (34.55%), Postives = 129/246 (52.44%), Query Frame = 3
Query:  228 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDS----------------KYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +ED +A + T  +   +  ++   + +K+ A++ N  C      IKE+              +K  + ++ P  V    +I+  N ED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+F KLG+ PPKGVL YGPPGTGKTL+ARA A +T+A F+++ G +LV
Sbjct:   13 EEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 5.972e-29
Identity = 65/155 (41.94%), Postives = 98/155 (63.23%), Query Frame = 3
Query:  426 PLQVARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            P+ V    +II    +D+  +++    ++  V +   V    +E G  V ++   + +   L    DP VT+M +E+ P  TY D+GG   QI++++E VELP+ HPE + ++GI PPKGV+ YGPPGTGKTLLA+AVAN+T A F+RV+GSEL+
Sbjct:  105 PMSVGNLEEII----DDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 255          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.972e-29
Identity = 74/202 (36.63%), Postives = 116/202 (57.43%), Query Frame = 3
Query:  297 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D  F++V+ S +V
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIV 204          
BLAST of CK934699 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.972e-29
Identity = 74/202 (36.63%), Postives = 116/202 (57.43%), Query Frame = 3
Query:  297 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIINPNSEDSKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELV 890
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE F ++GI PPKG L YGPPGTGKTLLARAVA++ D  F++V+ S +V
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIV 204          
The following BLAST results are available for this feature:
BLAST of CK934699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PSMR_METB64.136e-3043.87Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METMJ9.214e-3043.23Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METHJ2.053e-2944.52Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METPE2.681e-2943.23Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_AERPE2.681e-2941.48Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS10_SCHPO4.573e-2942.86Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS6A_BRACM5.972e-2934.5526S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS4_DROME5.972e-2941.9426S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS10_SPETR5.972e-2936.6326S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE5.972e-2936.6326S protease regulatory subunit S10B OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_H06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_H06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934699 ID=CK934699; Name=CK934699; organism=Citrus sinensis; type=EST; length=890bp
GGGGGACCCGATAAAGAAACTCGTCATCATAGATCGGATCCTACCACCTT
AAGGAAACTCGTGCGGTCGTGCCTCTCTTTCAAGCCAAACGCCTCGACGA
CACCGTTTCCTCAGAAAGACCTCGCCGACGGTTTTCAACGCCCAATCTTC
CTCTCTAGGAAATTCATAAAACAATGGCACCCGAGCCAGAAGATGAGATC
AAGGATGAGAAGAATCCCAGACCCCTTGATGAAGATGACATTGCGCTGCT
TAAAACATATGGTTTAGGACCGTATTCTACTAGCATAAAGAAAGCAGAGA
AGGAGATTAAGGACATGGCCAAGAAAGTCAACGACTTGTGTGGTATCAAG
GAATCTGACACAGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTATCCGA
TAAGCAGATGATGCAAGAGGAGCAGCCTCTTCAGGTTGCGAGATGCACCA
AGATTATCAATCCAAATTCTGAAGATTCTAAATATGTAATAAATGTTAAG
CAAATTGCCAAGTTTGTTGTTGGGCTTGGTGACAAAGTTTCCCCTACTGA
TATTGAAGAAGGGATGCGTGTGGGGGTTGACCGGAATAAATATCAAATTC
AAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTAACCATGATGACTGTG
GAAGAGAAACCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCA
GATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGA
AGTTCGTAAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTATGCTATGGT
CCTCCAGGGACTGGTAAAACGCTTCTAGCCAGAGCTGTGGCTAATAGAAC
TGATGCTTGTTTCATTCGTGTCATTGGAAGTGAACTTGTT
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