CK934737

Overview
NameCK934737
Unique NameCK934737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.079e-39
Identity = 94/253 (37.15%), Postives = 134/253 (52.96%), Query Frame = 3
Query:  135 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIV-------GRPR------------HTGVMVGMGQKDAYVGDEAQSKR---GILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVVLDYEQE 812
            DA     +V DNGTG  K GFAG+  P  + P++V       G+ R              GVM  +   D ++G++A ++        L YPI +G V NWD ME+ W    +N LR  PE+H  LLTE+PL P   RE   +IMFETFNVP +Y+A Q VL+L A   T     TG+V+D GDG +H VP+ +GY +  +I  + + G+D+T  + ++L ERG         ++ R +KE   Y   D  +E
Sbjct:    2 DAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHSAGVMADL---DFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPEDHYFLLTESPLTPPETREYTGEIMFETFNVPGLYIACQPVLALAAGYTTTKCEMTGVVVDVGDGATHIVPVADGYVIGSSIRSIPITGKDVTQFIQQLLKERGEHIPPEESFDVARRVKEMYCYTCSDIVKE 251          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.660e-37
Identity = 82/221 (37.10%), Postives = 125/221 (56.56%), Query Frame = 3
Query:  129 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG---------------------RPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG 725
            M   +++  +V D G+   KAG+AG+DAP+AVFPS++G                         T       ++  YVG +A S +R  + +  PI+ GIVS+WD ++ IW H F + L + P EHP+LL E PLN +  REK  ++MFE + VPA+++A   VL+ +A+GR T +V+D G G +   P+++GY L  A++   L G  LTD L+K L  +G
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSEDSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMIDPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCGGGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKG 221          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 79/224 (35.27%), Postives = 122/224 (54.46%), Query Frame = 3
Query:  129 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-------------------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG 725
            M   +++  +V D G+   KAG+AGDD P+AVFPS+VG    TG                         V     ++  YVG E + +R  + +  P++ G V++WD ++ IW+H F   L + PEEHP+L+ E   N    REK  ++MFE + VPA+++A  AVL+ +ASGR T +V+DSG G +    +++GY L  ++    + G  LTD +MK L  +G
Sbjct:    1 MYGGDEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDCMMKSLESKG 224          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 79/224 (35.27%), Postives = 122/224 (54.46%), Query Frame = 3
Query:  129 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-------------------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERG 725
            M   +++  +V D G+   KAG+AGDD P+AVFPS+VG    TG                         V     ++  YVG E + +R  + +  P++ G V++WD ++ IW+H F   L + PEEHP+L+ E   N    REK  ++MFE + VPA+++A  AVL+ +ASGR T +V+DSG G +    +++GY L  ++    + G  LTD +MK L  +G
Sbjct:    1 MYGGDEVSAIVIDVGSYSCKAGYAGDDTPKAVFPSVVGSIEQTGETDEAKADKEAEAASDSKNGAKPMDVDKAKTKRKLYVGQELEFRRDHMEVISPMKDGTVTDWDIVDNIWNHAFRQRLLINPEEHPMLIAEPSTNTGQQREKAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTVVAAVHDGYVLQKSVATSPIGGEFLTDCMMKSLESKG 224          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 6.702e-30
Identity = 68/188 (36.17%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  141 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 680
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P+++GY L   I++  LAG
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAG 196          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.702e-30
Identity = 68/188 (36.17%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  141 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 680
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P+++GY L   I++  LAG
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAG 196          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ACL6B_BOVIN (Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.702e-30
Identity = 68/188 (36.17%), Postives = 115/188 (61.17%), Query Frame = 3
Query:  141 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 680
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G+K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P+++GY L   I++  LAG
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGEKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAG 196          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ACL6A_MACFA (Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.702e-30
Identity = 79/238 (33.19%), Postives = 131/238 (55.04%), Query Frame = 3
Query:  141 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDA------YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFT---TTAEREIVRD-------MKEKLAYV 791
            +++  LV D G+  V+AG+AG+D P+  FP+ +G    R   + +M   G K        Y+   A +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG++LDSG   +  +P+++GY L   I++  LAG  +T    ++  E           A +E VR+        KEKL  V
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMVVERDDGSTLMEIDGDKGKQGGPTYYIATNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELVPPYMIASKEAVREGSPANWKRKEKLPQV 246          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ACL6A_HUMAN (Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.753e-30
Identity = 78/238 (32.77%), Postives = 130/238 (54.62%), Query Frame = 3
Query:  141 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDAYVG-------DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFT---TTAEREIVRD-------MKEKLAYV 791
            +++  LV D G+  V+AG+AG+D P+  FP+ +G    R   + +M   G K    G       +  +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG++LDSG   +  +P+++GY L   I++  LAG  +T    ++  E           A +E VR+        KEKL  V
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGMVVERDDGSTLMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYNIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELVPPYMIASKEAVREGSPANWKRKEKLPQV 246          
BLAST of CK934737 vs. ExPASy Swiss-Prot
Match: ACL6B_HUMAN (Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.143e-29
Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 3
Query:  141 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG--RPRHTGVMVGMGQKDA-----YVGDEA-QSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 680
            +++  LV D G+  V+AG+AG+D P+A FP+ VG       G +   G K+      ++   A    R    +  P+++G++ +W+    I  HT+   ++  P  HPVL++EAP N +A REK+T++MFE +N+PA ++   AVL+ +A+GR+TG+VLDSG   +  +P+++GY L   I++  LAG
Sbjct:    9 DEVGALVFDIGSFSVRAGYAGEDCPKADFPTTVGLLAAEEGGGLELEGDKEKKGKIFHIDTNALHVPRDGAEVMSPLKNGMIEDWECFRAILDHTYSKHVKSEPNLHPVLMSEAPWNTRAKREKLTELMFEQYNIPAFFLCKTAVLTAFANGRSTGLVLDSGATHTTAIPVHDGYVLQQGIVKSPLAG 196          
The following BLAST results are available for this feature:
BLAST of CK934737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 480
Match NameE-valueIdentityDescription
ARP3_ORYSI2.079e-3937.15Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]
ARP4_ARATH5.660e-3737.10Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ARP4_ORYSJ2.151e-3635.27Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]
ARP4_ORYSI2.151e-3635.27Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ACL6B_RAT6.702e-3036.17Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE6.702e-3036.17Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]
ACL6B_BOVIN6.702e-3036.17Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2... [more]
ACL6A_MACFA6.702e-3033.19Actin-like protein 6A OS=Macaca fascicularis GN=AC... [more]
ACL6A_HUMAN8.753e-3032.77Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE... [more]
ACL6B_HUMAN1.143e-2936.17Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_D01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934737 ID=CK934737; Name=CK934737; organism=Citrus sinensis; type=EST; length=864bp
GGGGACTACTACATTTTTAATCTCTCGGCAGTACCAAATACAGAGCGATA
GAGAGAATCGACACTCTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGT
CGTCTCTTCAATCTAACTTTTATAAAAAATGGCCGATGCTGAGGATATTC
AACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCTGGATTTGCT
GGAGATGATGCTCCAAGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCG
ACACACTGGAGTCATGGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTG
ATGAGGCCCAATCGAAAAGAGGTATTCTTACTTTGAAATACCCAATTGAG
CACGGTATTGTAAGCAACTGGGATGATATGGAAAAGATCTGGCATCATAC
CTTCTACAACGAGCTTCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCA
CTGAGGCACCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACCCAAATT
ATGTTTGAAACTTTCAATGTGCCAGCCATGTACGTTGCCATCCAGGCTGT
TCTATCTCTTTATGCCAGTGGTCGTACAACTGGTATTGTGCTGGATTCTG
GTGATGGTGTGTCTCATACTGTACCAATTTATGAGGGATATGCCCTTCCT
CATGCCATTCTTCGTTTGGACTTGGCTGGTCGTGATCTCACTGATGCATT
GATGAAGATTCTTACTGAGAGAGGTTACATGTTTACCACCACAGCCGAAC
GGGAAATTGTCCGTGACATGAAGGAGAAGCTTGCTTATGTTGTCCTAGAC
TATGAGCAAGAACTTGAGACTGCCNNNNGCAGCTCATCTGTTGAGAAGAA
CTATGAGCTGCCTG
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