CK934746

Overview
NameCK934746
Unique NameCK934746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.480e-22
Identity = 63/199 (31.66%), Postives = 92/199 (46.23%), Query Frame = 2
Query:  314 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSXRGPNFGTHMXXLYGESVC 910
            F      RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A+  +L+N+P+ +  +AT++F+ AIW WMTP + ++PS+HD  +G W P+  D  + R P +G     + G   C
Sbjct:   36 FNEMLKNRNDGRCPANGFYTYDAFIAAANSFP--GFGTTGDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIEC 212          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 9.594e-22
Identity = 57/166 (34.34%), Postives = 92/166 (55.42%), Query Frame = 2
Query:  314 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQS-YCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHD 808
            F+  FS R      + GF+ Y SF+ A   +    FGT G    + +E+ AFLAH+   TS G       P AWGLC+ +  + +++ +C  S    +PC  G +Y  RG I +  N+NYG  G+A+  DL+ +P+ +E++  ++F+ A+W WM+    ++PS HD
Sbjct:  139 FDQMFSHRKD--CPSQGFYSYHSFLVAAESFP--AFGTIGDVATRKREVAAFLAHISQATS-GERSDVENPHAWGLCHINTTTVTENDFCTSS---DWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQ-HDNKPSCHD 295          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.791e-21
Identity = 62/201 (30.85%), Postives = 90/201 (44.78%), Query Frame = 2
Query:  314 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKA--DLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSXRGPNFGTHMXXLYGESVC 910
            FE   S RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T  G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    DL+N+P+ +  +  ++F  AIW WMT  + ++PS H+  +G W P+  DT + R P +G     + G   C
Sbjct:   36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSFP--GFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMT-AQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLEC 212          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.219e-21
Identity = 60/201 (29.85%), Postives = 92/201 (45.77%), Query Frame = 2
Query:  314 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKA--DLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSXRGPNFGTHMXXLYGESVC 910
            FE   S RN     A GF+ Y +FI A   +   GFGT G    + KEI AF      +T+ G    + G    G C+  ++  S                   YYGRG I +    NY   G+ +    +L+N+P+ +  +  ++F+ AIW WMT  + ++PS H+  +G W P+  DT + R P +G     + G+  C
Sbjct:   36 FEQMLSFRNNDACPAKGFYTYDAFIAAANSFP--GFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTE-QDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFEC 212          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.219e-21
Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:  314 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMK-EICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSXRGPNFGTHMXXLYGESVC 910
            F +    R+     A GF+ Y +FI A   +    FGT+G   + ++ E+ AF      +T+ G    +     WG C+  E++ + S                 YYGRG I +    NY A G AL  DL+ +P+ +  +A ++F+ AIW WMT  + ++PS HD  +G W P+  DT + R P +G     + G   C
Sbjct:   41 FNSMLPNRDNSQCPARGFYTYDAFIAAANSFP--AFGTSGGSAELIRRELAAFFGQTSHETTGGTR-GSSDQFQWGYCFKEEINKATS---------------PPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLVSTDAVVSFKTAIWFWMT-AQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIEC 221          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.264e-20
Identity = 57/155 (36.77%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  356 AVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFV 817
            A GF+   +F+TA   Y    FG TG+  D  +EI AF AH   +T                CY  E+  PS++YCD++    +PC  G  YYGRG + I WN+NYG  G+++  D L  P+ + ++  LAF+ A+W W   V       HDAFV
Sbjct:   90 AKGFYTRDAFLTAAGGYP--SFGRTGSVDDSKREIAAFFAHANHETI-------------KFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNV-------HDAFV 221          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.264e-20
Identity = 54/140 (38.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  365 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPV 781
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T               +CY +E++  S  YCD + K  +PC PG +YYGRG + I WNYNYG  G+ +  D L  P+ + Q+ T++F+ A+W WM  V
Sbjct:  112 FYTRQSFLNAAHSYS--GFARDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGASMDYCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNV 235          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.173e-19
Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = 2
Query:  365 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSXRGPNFG 874
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T               +CY +E++  +  YCD S K  +PC PG +YYGRG + I WN+NYG  G+ +  D L  P+ + Q+ T++F+ A+W WM  V +       A +       N  L   G N G
Sbjct:  109 FYTRQSFLNAARSYS--GFANDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATI----RAINGALECNGKNPG 259          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.001e-19
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  365 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFV 817
            F+   +F++A   Y   GF   GT+++  +EI AF AHV  +T                CY  E++ S +YCD S +  +PC  G +YYGRG + I WNYNYG  G  +  + L  P  + Q+A +AF+ A+W WM  V    P    A +
Sbjct:  105 FYTRSAFLSAVNAYP--GFAHGGTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATI 239          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.613e-19
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  365 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDA 811
            F+   +F++A   Y   GF   G+++   +EI AF AH   +T                CY  E++ S +YCD + K  +PC  G +YYGRG + I WNYNYG  G A+  D L  P  + ++A +AF+AA+W WM  V    P    A
Sbjct:   94 FYTRSAFLSAVKGYP--GFAHGGSQVQGKREIAAFFAHATHETG-------------HFCYISEINKSNAYCDPT-KRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGA 226          
The following BLAST results are available for this feature:
BLAST of CK934746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHIQ_TOBAC1.480e-2231.66Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
AGI_URTDI9.594e-2234.34Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIA_SOLCI2.791e-2130.85Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC6.219e-2129.85Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ6.219e-2130.00Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ5.264e-2036.77Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ5.264e-2038.57Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.173e-1934.50Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE2.001e-1935.10Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE2.613e-1935.57Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_C04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934746 ID=CK934746; Name=CK934746; organism=Citrus sinensis; type=EST; length=912bp
GGGGGACGCTGCATCCGCCTTGTCAAATCCCTTGCTTCCCATTTCTCTCA
TCTTCCCCCAAGTGAATCTCGAAACAACAGGTAGATCTGGTGAGAACGAG
AAAATGAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACT
AGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGG
TGATAGTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAG
TGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTT
CCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGG
CACATGCCGTGGGATTCTGGGATTATCAGTCTTTCATTACTGCCACCGTC
AAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGAT
GAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTG
GATATGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAAC
CATGAAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACAC
ATATCCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTA
TATACTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGAT
CTGTTGAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGA
GGCTGCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCCAGCCTTCAG
CCCATGATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTG
TCCNAACGGGGACCTAACTTTGGTACCCACATGANNNNNCTCTATGGTGA
GAGCGTATGCGN
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