CK934746

Overview
NameCK934746
Unique NameCK934746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length912
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.098e-17
Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  419 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPV 781
            FG  G+  D  +EI AF AH+  +T+              LC+  E       +YCD      YPC  G +YYGRG + + WNYNY   G+A+  D L +PE +  +   +F+AA+W WMT V
Sbjct:  126 FGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNV 235          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.194e-17
Identity = 50/141 (35.46%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  365 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVK 784
            F+   SFI A   +    F  + T+    +EI    AH   +T                CY  E++  S+ YCD++ +  YPC PG  Y+GRG I + WNYNYGA G++L  +LL  PE +  N T+AF   +W WM  V+
Sbjct:   97 FYTRDSFINAANTFP--NFANSVTR----REIATMFAHFTHETG-------------HFCYIEEINGASRDYCDENNRQ-YPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVR 217          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  365 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWM 772
            F+   +F+ A   Y   GFGT  T  D+ +EI A+ AHV  +T               LCY  E    + +YC +S +Y  PC P  EY+GRG + + WNYNY   G+ L  D LN P+ + ++  ++F+ ++W W+
Sbjct:   71 FYTRSNFLEAVSAYP--GFGTKCTDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of CK934746 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.753e-15
Identity = 46/141 (32.62%), Postives = 68/141 (48.23%), Query Frame = 2
Query:  365 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVK 784
            F+   +F++A   Y    FG  G++ D  +EI A  AH   +T                CY  E+   S+ YCD+     YPC+    Y+GRG I + WN+NYG  G A   D L  PE +  +  ++F+ A+W WM  V+
Sbjct:   93 FYTRDAFLSALNSYTD--FGRVGSEDDSKREIAAAFAHFTHETG-------------HFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVR 218          
The following BLAST results are available for this feature:
BLAST of CK934746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHIP_BETVU1.098e-1736.59Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_BRANA3.194e-1735.46Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIT_DIOJA2.704e-1634.31Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU1.753e-1532.62Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_C04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934746 ID=CK934746; Name=CK934746; organism=Citrus sinensis; type=EST; length=912bp
GGGGGACGCTGCATCCGCCTTGTCAAATCCCTTGCTTCCCATTTCTCTCA
TCTTCCCCCAAGTGAATCTCGAAACAACAGGTAGATCTGGTGAGAACGAG
AAAATGAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACT
AGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGG
TGATAGTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAG
TGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTT
CCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGG
CACATGCCGTGGGATTCTGGGATTATCAGTCTTTCATTACTGCCACCGTC
AAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGAT
GAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTG
GATATGGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAAC
CATGAAATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACAC
ATATCCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTA
TATACTGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGAT
CTGTTGAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGA
GGCTGCAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCCAGCCTTCAG
CCCATGATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTG
TCCNAACGGGGACCTAACTTTGGTACCCACATGANNNNNCTCTATGGTGA
GAGCGTATGCGN
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