CK934760

Overview
NameCK934760
Unique NameCK934760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934760 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 62/201 (30.85%), Postives = 102/201 (50.75%), Query Frame = 1
Query:  304 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPTVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSN----NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTT 891
            R   W  ++ H +TA++G+GVL L + +AQLGW  G  VL+    IT YT   + + +   + V GKR   Y ++ + + G R  + +    Q    +GV I Y +T   S+          +  H + C   +    +  ++IFA    VLS +PNF+ +S +S++AAVMS +YS+I    + AK + +       +GTT
Sbjct:   41 RNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSWIITLYTLWQMVEMH---EMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSL----------KKFHEIACQDCSPIRLSFFIMIFASSHFVLSHLPNFNSISGVSLVAAVMSLSYSTIAWTATAAKGVQEDVQYGYKSGTT 228          
BLAST of CK934760 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.800e-15
Identity = 64/204 (31.37%), Postives = 102/204 (50.00%), Query Frame = 1
Query:  304 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPTVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSN----NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD----GPHATTLTGT 888
            R   W  ++ H +TA++G+GVL L +A++QLGW  G  VL+    IT YT   + + +   + V GKR   Y ++ + + G +  + +    Q    IGV I Y +T   S+          +  H + C           ++IFA +  VLS +PNF+ +S +S+ AAVMS +YS+I    S +K + +    G  A T  GT
Sbjct:   34 RNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMH---EMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSL----------KKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGT 224          
BLAST of CK934760 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.359e-14
Identity = 61/198 (30.81%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  304 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPTVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL-IGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGDGPHATTLTGTTV 894
            R   W  ++ H +TA++G+GVL L +A++QLGW  G   ++    IT+Y+   L    +  + V GKR   Y ++ + + G +      + Q   + I   I Y +T   S+   K       +  H++        ++ FA +Q+VLSQ P+F+ +  +S+LAA+MSF YS I    SIAK     P    + G TV
Sbjct:   35 REAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYS---LWQMVQLHEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLK--KFVELLFPNLEHIR----QTYYILGFAALQLVLSQSPDFNSIKIVSLLAALMSFLYSMIASVASIAKGTEHRPSTYGVRGDTV 223          
BLAST of CK934760 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 54/186 (29.03%), Postives = 95/186 (51.08%), Query Frame = 1
Query:  304 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPTVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAKVIGD 858
            R   W  ++ H +TA++G+GVL L +A+++LGW  G  VL+    IT YT   + + +   +   GKR   Y ++ +A+ G +  + +    Q        I Y +T   S+  + + +        +K        ++IFA  Q VLS + NF+ +S +S++AAVMS +YS+I    S+ K + +
Sbjct:   34 RNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMH---EMFEGKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDYECRKLKV----RHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVAN 212          
BLAST of CK934760 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 58/183 (31.69%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  304 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPTVLMAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGR-SVQLCGLAQYGNLIGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSN-NPLMIIFACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIAK 846
            R   W  ++ H +TA++G+GVL L +A+++LGW  G  VL+    IT YT   + + +   +   G+R   Y ++ +A+ G +  + +    Q    I V I Y +T   S+  V         G   KC        ++IFA  Q VLS + NF+ +S +S++AAVMS +YS+I    S+ K
Sbjct:   32 RNANWYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMH---EMFEGQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLAL----GDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRK 207          
BLAST of CK934760 vs. ExPASy Swiss-Prot
Match: LHTL6_ARATH (Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.351e-12
Identity = 59/185 (31.89%), Postives = 87/185 (47.03%), Query Frame = 1
Query:  304 RTGTWVTASAHIITAVIGSGVLSLAWAIAQLGWVAGPTVL---MAFSFITYYTSTLLSDCYRSPDPVTGKRNYTYMDVVRASLGGRSVQLCGLAQYGNL-IGVTIGYTITASISMVAVKRSNCFHRHGHHVKCYTSNNPLMII-FACIQIVLSQIPNFHKLSWLSILAAVMSFAYSSIGIGLSIA 843
            R   W  ++ H +TA+IG+GVLSL +A+A LGW  G  VL      +  T +    L +C      V G R   Y+D+ R + G +      L Q   + +G  I Y +T    +       C         C        I+ F  +  +LSQ+PNF+ ++ +S+ AAVMS  YS+I  G SIA
Sbjct:   28 RPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTWGLTLNTMWQMVQLHEC------VPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVTGGKCLKQFVEITC-------STCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWGGSIA 199          
The following BLAST results are available for this feature:
BLAST of CK934760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
LHTL1_ARATH2.228e-1530.85Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHT1_ARATH3.800e-1531.37Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHTL5_ARATH9.359e-1430.81Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL3_ARATH2.723e-1329.03Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LHTL4_ARATH4.645e-1331.69Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL6_ARATH1.351e-1231.89Lysine histidine transporter-like 6 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_B12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934760 ID=CK934760; Name=CK934760; organism=Citrus sinensis; type=EST; length=894bp
GGGGATCACTATATATAATTGAGAAACGGATCCTCTTGTTTCTACCCTAC
CCTGCTACTACAGGTGCCACACACAACAACACTGCCCCACTGACTTTGCA
GCATAAGCTGTTGCTACTGCTACTCATTTTTAATTAATCATATCTCCTAA
TTTCTCAACTTCTCAGCAACCCCATTTCAGCTTCTTCAACTACTCAACAG
AGACATGGCGAAGGAGATGCAAAAGAACAGCATGTATATCGAACAAAATG
ACCCTGAAGGTGATATCCGCAAAGACTTTCTGGATGATGATGGTCGAGTA
AAAAGAACTGGGACTTGGGTGACTGCAAGTGCTCATATTATCACGGCAGT
GATTGGCTCTGGTGTACTGTCTCTGGCATGGGCCATTGCTCAGCTTGGCT
GGGTAGCTGGCCCAACTGTTCTCATGGCTTTCTCATTCATCACCTATTAC
ACCTCTACTTTGCTTTCCGATTGTTACCGGTCTCCTGATCCCGTCACCGG
CAAACGAAACTACACCTACATGGATGTAGTCAGAGCTAGCCTAGGAGGAA
GGAGCGTGCAGCTATGTGGATTGGCTCAGTATGGAAATCTCATTGGAGTT
ACGATTGGTTATACTATCACTGCATCTATTAGCATGGTGGCTGTTAAAAG
GTCAAATTGCTTCCACAGACATGGTCACCATGTCAAGTGCTACACATCAA
ACAATCCACTCATGATCATCTTTGCCTGCATCCAGATTGTTCTTAGCCAA
ATACCAAACTTTCATAAGCTCTCCTGGCTCTCAATTCTCGCTGCCGTAAT
GTCTTTTGCTTATTCCTCCATTGGAATTGGCCTCTCCATAGCCAAAGTCA
TAGGTGATGGGCCGCATGCAACAACCTTAACGGGGACAACAGTA
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