CK934771

Overview
NameCK934771
Unique NameCK934771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934771 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  500 TALFFLEKDLHPGMKMNLHFTQTSNGAT-FLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLG 796
            T +FF E+ +  G ++   F   +  A  FL RQ A S PF++  LP +   F V   S     M+ T++ CE P I GE K+CATSLE++++ +   LG
Sbjct:  166 TTVFFHEEAVRVGKRLPFRFPPATPAALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLG 265          
BLAST of CK934771 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 43/112 (38.39%), Postives = 54/112 (48.21%), Query Frame = 2
Query:  509 FFLEKDLHPGMKMNL-HFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIMQNTIKECEDPGIKGEQKYCATSLESMIDFSTSKLGKSVQAISTXXKKGTK 841
            FF E  L  G  M +          TFL R   K+ PFSS  + EI+  F     S  A I+ + + ECE P   GE K C  S E MIDF+TS LG+ V   +T    G+K
Sbjct:  409 FFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGIISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSK 520          
BLAST of CK934771 vs. ExPASy Swiss-Prot
Match: BURP7_ORYSJ (BURP domain-containing protein 7 OS=Oryza sativa subsp. japonica GN=BURP7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.723e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  506 LFFLEKDLHPGMKMNLHFTQTSNGATFLSRQAAKSTPFSSDKLPEIFNQFSVKPGSVEAEIM 691
            +FFLEKDL PG K+ LHFT+ + GA  L R  A S P +++KLPEI +Q SV  GS  A+ M
Sbjct:   64 VFFLEKDLFPGSKLTLHFTRATAGAALLPRGRADSVPLATEKLPEILSQLSVPAGSPAADAM 125          
The following BLAST results are available for this feature:
BLAST of CK934771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RAF1A_WHEAT1.355e-1137.00Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
Y639_ARATH3.018e-1138.39Probable polygalacturonase non-catalytic subunit A... [more]
BURP7_ORYSJ6.723e-1153.23BURP domain-containing protein 7 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_A01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934771 ID=CK934771; Name=CK934771; organism=Citrus sinensis; type=EST; length=844bp
GGGGATGAAAGCCTAGATTTTAGATTACATACTATCTTGTATTCTGGGTG
TCTTTTAAAACATACTCAAAGCTATAATGGAGTTTCACTTGTTGCCCATC
CTTGCTTTCCTCAGTCTAGCACTGGTAGCAAGTCATGCTGACATTTCTCC
TGAGCTTTACTGGAAAACTGTACTGCCAAATTCCCCGATGCCAAAAGCTG
TCAAAGATCTTCTACAGCCAGATGTGCTGGAAGACAAAAGCACCTCTGTC
AACGTAGGGAAGGGTGGTGTCAATGTGGATGCAGGGAAAGGAAAGCCCGG
TGGTGGCACCCATGTGAATGTTGGGGGTAAGGGCGTTGGTGTAAACACTG
GAAAGCCTGACAAAAGAACCAGTGTTGGTGTTGGCAAAGGAGGAGTATCC
GTAAGTACAGGACACAAGGGAAAGCCAGTTTATGTTGGAGTAAGCCCATT
CAACTATGTATATGCTGCAAATGAGAACCAACTCCATGATGACCCGAATA
CAGCTCTTTTCTTCTTGGAAAAGGACTTGCATCCTGGCATGAAGATGAAC
TTGCACTTCACTCAAACTTCAAATGGAGCAACTTTCTTATCTCGCCAAGC
TGCCAAATCAACTCCTTTCTCGTCTGACAAATTGCCTGAGATCTTTAACC
AGTTTTCCGTGAAACCTGGATCAGTTGAAGCTGAAATAATGCAGAACACA
ATCAAAGAGTGTGAAGACCCTGGCATTAAAGGAGAGCAGAAATATTGTGC
AACTTCACTGGAGTCAATGATTGACTTCAGCACTTCTAAGCTTGGAAAGA
GTGTTCAGGCAATTTCTACGGNNNTAAAAAAAGGAACCAAGATG
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