CK934772

Overview
NameCK934772
Unique NameCK934772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS15_NATPD (30S ribosomal protein S15P/S13e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps15p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.030e-21
Identity = 54/137 (39.42%), Postives = 80/137 (58.39%), Query Frame = 2
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPK 484
            M RMHSR +G S S  P    PP W ++    +ED + + A++G  PSQIG+ LRD       +  VK  TG K+  IL+ +    E+PEDL +L+++A+ +R+H++RN  D  +K  L   ES+I RL  YY+  K
Sbjct:    1 MARMHSRRRGSSGSDRPTADEPPEWSEVDEDAIEDRVVELAEEGYDPSQIGLKLRDEGVQGVPVPDVKLATGKKVTEILEENDAENELPEDLRNLMERAIRLREHMDRNPGDAQNKRALQNTESKIRRLVDYYRGDK 137          
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS15_THEVO (30S ribosomal protein S15P/S13e OS=Thermoplasma volcanium GN=rps15p PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.649e-20
Identity = 52/139 (37.41%), Postives = 80/139 (57.55%), Query Frame = 2
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKPKKLPPVW 502
            M RMH+R +G S S   Y    P+W++ S  ++ +      K G+T S +G+ LRD +G+  VK++ G K+ ++L   G+  EIPEDL  LIK+   + KH+E N KD  +K    L+ +++ RL RYYK+   L   W
Sbjct:    1 MARMHTRKRGKSGSKKVYG-VEPNWVQYSKDEILNIAVDLKKSGMTSSVVGIRLRDQYGVPTVKAIFGKKLNKLLAEKGIRDEIPEDLNSLIKRYNNVAKHVELNPKDHSNKRGRDLIMAKMLRLVRYYKRTGVLDQKW 138          
BLAST of CK934772 vs. ExPASy Swiss-Prot
Match: RS15_HALMA (30S ribosomal protein S15P/S13e OS=Haloarcula marismortui GN=rps15p PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.374e-18
Identity = 49/134 (36.57%), Postives = 76/134 (56.72%), Query Frame = 2
Query:   86 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 475
            M RMH+R +G S S  P    PP W  +    +E  + + A++G +PS+IG+ LRD       I  V   TG K+  IL+ +   P++PEDL +L+++AV +R H++ N  D  +K  L   +S+I RL  YY+
Sbjct:    1 MARMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDEGVQGTPIPDVSLATGKKVTEILEENEAEPDLPEDLRNLLERAVRLRDHMDENPGDYQNKRALQNTQSKIRRLIDYYR 134          
The following BLAST results are available for this feature:
BLAST of CK934772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_NATPD1.030e-2139.4230S ribosomal protein S15P/S13e OS=Natronomonas ph... [more]
RS15_THEVO5.649e-2037.4130S ribosomal protein S15P/S13e OS=Thermoplasma vo... [more]
RS15_HALMA2.374e-1836.5730S ribosomal protein S15P/S13e OS=Haloarcula mari... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004227_A02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934772 ID=CK934772; Name=CK934772; organism=Citrus sinensis; type=EST; length=807bp
GGGGAAAGAAGCTAGGGTTTGGTGCGGCTTGTTGCAGTACAAAGTTGAAC
ACAAAGCTTGCTGCTTCACCTCCGTCGACGTCACCATGGGTCGTATGCAC
AGTCGCGGTAAGGGTATTTCTGCTTCAGCTTTGCCTTACAAGAGAACACC
ACCAAGTTGGCTCAAGATTTCCAGCCAAGATGTTGAGGATAACATCTGTA
AGTTTGCAAAGAAGGGTTTGACTCCATCACAGATTGGTGTTATTCTTCGT
GACTCTCACGGTATTGCCCAGGTTAAGAGCGTTACTGGAAGCAAGATTTT
GCGTATCCTCAAGGCTCATGGACTCGCACCTGAAATTCCTGAGGATCTGT
ACCACCTCATCAAGAAGGCTGTTGCTATTAGGAAGCATTTGGAAAGGAAC
AGGAAGGACAAGGATTCCAAGTTCCGCTTGATTCTTGTTGAAAGCAGGAT
TCACAGGCTTGCTCGCTACTACAAGAAACCCAAGAAGCTTCCTCCTGTCT
GGAAATATGAGTCTACTACCGCCAGCACACTTGTGGCTTAGGCTAAGCAA
GATGCTAGGCGTTGTTTGTGATATCCTTTGTTGGTATCACAACACTCTTT
AAGGAGCCTGATGATTTTATGGTGGATTAGTATAAGTTCAGATGTAAGAC
CTTTATTCATAGTTTTTTTGGAAAGATTAGTCCTTGGAGGAACAGAAATT
TGGAACTTGTTTTTTATTTTGTTGCCTAACGTTTTGTTTCCTTTCGAAAT
TTTGTATTTTTGATGCACTTTATATTCGAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA
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