CK934815 | Citrus Genome Database

Overview


Name	CK934815
Unique Name	CK934815
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	935

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = 2

Query:  596 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 886
            +  +KPL DR+FIKV+ +EE TAGG+LL +++KEKP +G V  VGPG L+++G+R+   ++ G+ V+YSKYAG D K   G  Y+ L   +++AV+S
Sbjct:    8 VSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIK-LGGDEYVLLSEKDILAVVS 103

HSP 2 Score: 86.6557 bits (213), Expect = 2.139e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  305 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 583
            +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ GEV  VG GK     ++    V  G +V+YSKYAGT+++  G  ++++ E D++ ++
Sbjct:    9 STVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSIGDKVLYSKYAGTDIKLGGDEYVLLSEKDILAVV 102

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.164e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 2

Query:  308 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 583
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94

HSP 2 Score: 96.2857 bits (238), Expect = 2.699e-19
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 2

Query:  602 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 886
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.164e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 2

Query:  308 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 583
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVAVG GK     KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ ++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMREDDILAVI 94

HSP 2 Score: 96.2857 bits (238), Expect = 2.699e-19
Identity = 44/95 (46.32%), Postives = 69/95 (72.63%), Query Frame = 2

Query:  602 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 886
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+AVGPG   ++G   P+++  G+TV+++KYAG + K  DG  ++ +R  +++AV++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKLIPMAVKAGDTVLFNKYAGTEVK-LDGVEHLVMREDDILAVIT 95

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_CLAM3 (10 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.164e-20
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 2

Query:  605 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 883
            +KPL DR+ I+  EAE+TTA GL++ + +KEKP  G V+AVGPG +D+ GNR PL +A G+ V+YSKY G + K  DG + + L A +V+AV+
Sbjct:    5 IKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-YDGQDLLVLSARDVLAVI 96

HSP 2 Score: 80.1073 bits (196), Expect = 2.002e-14
Identity = 41/96 (42.71%), Postives = 64/96 (66.67%), Query Frame = 2

Query:  308 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 586
            SIKPL DR++++    E+ T  G+ +P  A+ KPQ GEVVAVG G+      +  LD++V  G +VIYSKY GTE++++G + L++   DV+ ++E
Sbjct:    4 SIKPLEDRIVIQQVEAEQTTASGLVIPDTAKEKPQEGEVVAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKYDGQDLLVLSARDVLAVIE 97

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.438e-20
Identity = 46/97 (47.42%), Postives = 70/97 (72.16%), Query Frame = 2

Query:  596 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 883
            +  +KPL DRVF+K++E+EE TAGG+LL + +KEKP +G V+ VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV+
Sbjct:    8 VSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVV 102

HSP 2 Score: 86.2705 bits (212), Expect = 2.793e-16
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 2

Query:  305 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 583
            +++KPLGDRV VKI   EEKT GGI LP  A+ KPQ GEVV VG GK+          V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGIGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_SYNJB (10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.438e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 2

Query:  305 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 586
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     ++++ E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103

HSP 2 Score: 94.7449 bits (234), Expect = 7.853e-19
Identity = 44/97 (45.36%), Postives = 67/97 (69.07%), Query Frame = 2

Query:  596 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 883
            +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+ L   +++A++
Sbjct:    8 VSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDKVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.438e-20
Identity = 49/95 (51.58%), Postives = 69/95 (72.63%), Query Frame = 2

Query:  305 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 586
            +++KPLGDRVLVKI   +EKT GGIFLP  A+ KPQ GEVVAVG GK   + KL  + +K G +V+YSKYAGTE++     ++++ E D++ I++
Sbjct:    9 STLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSDEYVLLAERDILAIVQ 103

HSP 2 Score: 95.1301 bits (235), Expect = 6.013e-19
Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = 2

Query:  587 TDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVL 883
            T  +  LKPL DRV +K+A+ +E TAGG+ L + +KEKP +G V+AVGPG  ++EG   P+ +  G+ V+YSKYAG + K GSD   Y+ L   +++A++
Sbjct:    5 TLNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAGTEVKLGSD--EYVLLAERDILAIV 102

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.438e-20
Identity = 48/98 (48.98%), Postives = 70/98 (71.43%), Query Frame = 2

Query:  596 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK-GSDGTNYIALRASEVMAVLS 886
            +  +KPL DRVFIKV+E+EE TAGG+LL + +KEKP +G V  VGPG  +++G+R+   +  G+ V+YSKYAG D K GSD   Y+ L   +++AV++
Sbjct:    8 VSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSD--EYVLLSEKDILAVVN 103

HSP 2 Score: 83.5741 bits (205), Expect = 1.810e-15
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 2

Query:  305 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 583
            +++KPLGDRV +K+   EEKT GGI LP  A+ KPQ GEV  VG GK           V  G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGVGDKVLYSKYAGTDIKLGSDEYVLLSEKDILAVV 102

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_LEIXX (10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.438e-20
Identity = 48/93 (51.61%), Postives = 66/93 (70.97%), Query Frame = 2

Query:  605 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 883
            +KPL DR+ IK  EAE+TTA GL++ + +KEKP  G V AVGPG +D+ GNR PL +A G+ V+YSKY G + K   G +Y+ L A +V+AV+
Sbjct:    5 IKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAVGDKVIYSKYGGTEVK-FGGQDYLVLSARDVLAVV 96

HSP 2 Score: 77.0258 bits (188), Expect = 1.695e-13
Identity = 40/95 (42.11%), Postives = 61/95 (64.21%), Query Frame = 2

Query:  308 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK---TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 583
            SIKPL DR+++K    E+ T  G+ +P  A+ KPQ G V AVG G+      +  LD++V  G +VIYSKY GTE++F G ++L++   DV+ ++
Sbjct:    4 SIKPLEDRIVIKQVEAEQTTASGLVIPDTAKEKPQEGVVEAVGPGRIDDNGNRVPLDVAV--GDKVIYSKYGGTEVKFGGQDYLVLSARDVLAVV 96

[Close]

BLAST of CK934815 vs. ExPASy Swiss-Prot
Match: CH10_CYAA5 (10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 51142) GN=groS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.438e-20
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = 2

Query:  596 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMA 877
            +  +KPL DR+F+KV+ AEE TAGG+LL + ++EKP IG V+AVGPG  +++G+R  L +  G+ V+YSKYAG D K S G +Y+ L   +++A
Sbjct:    8 VSTVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLS-GEDYVLLSEKDILA 100

HSP 2 Score: 95.5153 bits (236), Expect = 4.604e-19
Identity = 45/91 (49.45%), Postives = 67/91 (73.63%), Query Frame = 2

Query:  305 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 574
            +++KPLGDR+ VK+   EEKT GGI LP  AQ KPQ GEVVAVG GK     ++ ++ VK G +V+YSKYAGT+++ +G +++++ E D++
Sbjct:    9 STVKPLGDRIFVKVSPAEEKTAGGILLPDNAQEKPQIGEVVAVGPGKRNDDGSRSELDVKVGDKVLYSKYAGTDVKLSGEDYVLLSEKDIL 99

The following BLAST results are available for this feature:

BLAST of CK934815 vs. ExPASy Swiss-Prot

BLAST of CK934815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10_PROM0	3.188e-20	47.42	10 kDa chaperonin OS=Prochlorococcus marinus (stra...	[more]
CH10_LAWIP	4.164e-20	50.54	10 kDa chaperonin OS=Lawsonia intracellularis (str...	[more]
CH10_LAWIN	4.164e-20	50.54	10 kDa chaperonin OS=Lawsonia intracellularis GN=g...	[more]
CH10_CLAM3	4.164e-20	50.54	10 kDa chaperonin OS=Clavibacter michiganensis sub...	[more]
CH10_SYNS3	5.438e-20	47.42	10 kDa chaperonin OS=Synechococcus sp. (strain CC9...	[more]
CH10_SYNJB	5.438e-20	51.58	10 kDa chaperonin OS=Synechococcus sp. GN=groS PE=...	[more]
CH10_SYNJA	5.438e-20	51.58	10 kDa chaperonin OS=Synechococcus sp. (strain JA-...	[more]
CH10_PROMA	5.438e-20	48.98	10 kDa chaperonin OS=Prochlorococcus marinus GN=gr...	[more]
CH10_LEIXX	5.438e-20	51.61	10 kDa chaperonin OS=Leifsonia xyli subsp. xyli GN...	[more]
CH10_CYAA5	5.438e-20	48.94	10 kDa chaperonin OS=Cyanothece sp. (strain ATCC 5...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004226_E10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_E10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934815 ID=CK934815; Name=CK934815; organism=Citrus sinensis; type=EST; length=935bp
GGGGGTCTAGGGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGAA
ACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAAT
CTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAAC
AGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTC
TCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAA
CGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAA
GTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGA
CTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAA
ACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGT
TGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCT
ATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTC
ATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAA
GGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTG
AGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAA
CCTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGA
AGGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATT
CGAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATT
GCTTTAAGAGCTTCTGAAGTGATGGCTGTGCTCTCTTAGTTGTCTGTGTT
TACTTGAGCGAGGCTTTATATGTATTAGTGAATTG