CK934818

Overview
NameCK934818
Unique NameCK934818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.487e-27
Identity = 92/261 (35.25%), Postives = 132/261 (50.57%), Query Frame = 3
Query:   81 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            MAT T   S++ F   A K    S  +TG+     R+ A K  P SS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    1 MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.943e-27
Identity = 93/258 (36.05%), Postives = 132/258 (51.16%), Query Frame = 3
Query:   81 MATVTTQASAAVFRPCASK----SRFLTGSSGKLNREVA--LKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            MA  T   S++ F   A K    S  +TG+     R+ A   KPVSSS+ +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+  G ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    1 MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYGPNRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGG-SQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.537e-27
Identity = 94/261 (36.02%), Postives = 135/261 (51.72%), Query Frame = 3
Query:   81 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            MA  TT  S+    P A K+  L+ SS ++  N +V +       KPVSS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNN 253          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.537e-27
Identity = 91/266 (34.21%), Postives = 128/266 (48.12%), Query Frame = 3
Query:   81 MATVTTQASAAVF-RPCASKSRFLTGSSGKLNREVALKP---VSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            MA  T   S+ V  R   S S  L G +    R+ A KP    SS + +    +  +L  L+   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++ ++ +L   VE   ++    P     DP+            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE--GYRIAGGPLGEVVDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.313e-27
Identity = 93/258 (36.05%), Postives = 131/258 (50.78%), Query Frame = 3
Query:   81 MATVTTQASAAVFRPCA----SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            MA  T   S++ F   A    S S  +TG+     R+   K  P SSS+ +    + ++L   +  +P+YL G  P D G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + GI      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    1 MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.313e-27
Identity = 94/261 (36.02%), Postives = 135/261 (51.72%), Query Frame = 3
Query:   81 MATVTTQASAAVFRPCASKSRFLTGSSGKL--NREVAL-------KPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            MA  TT  S+    P A K+  L+ SS ++  N +V +       KPVSS + +    + ++L   +  SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    1 MAASTTALSS----PFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.327e-27
Identity = 74/199 (37.19%), Postives = 104/199 (52.26%), Query Frame = 3
Query:  258 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIV 809
            P YLNG + GD G+DP GL + PEN   Y   EL+++RWAMLG  G ++PE   K G    P+  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A   E     K KE+ NGRLAM A LGF +Q  VTG+GP ENL +H+SDP+ N ++
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITN-GLDFEDKL------------HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.327e-27
Identity = 91/257 (35.41%), Postives = 131/257 (50.97%), Query Frame = 3
Query:   81 MATVTTQASAAVFRPCA---SKSRFLTGSSGKLNREVALK--PVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            MA  T   S++ F   A     S  +TG+     R+   K  PVSS + +    + ++L   +  +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:    1 MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 87/239 (36.40%), Postives = 123/239 (51.46%), Query Frame = 3
Query:  138 SRFLTGSSGKLNREVALKPVSSSAS-----FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            S+ L G+   + +    K V+SS S      +V+  G +     SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H+SDP +N
Sbjct:   26 SQELGGARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSG--ESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNN 255          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.652e-27
Identity = 84/230 (36.52%), Postives = 122/230 (53.04%), Query Frame = 3
Query:  147 LTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLAS--PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            + G++    R+ A K VSS + +    + ++L   +   P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   17 IQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 242          
The following BLAST results are available for this feature:
BLAST of CK934818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2G_SOLLC1.487e-2735.25Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_NICPL1.943e-2736.05Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB25_NICPL2.537e-2736.02Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB21_ORYSJ2.537e-2734.21Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_PETSP3.313e-2736.05Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC3.313e-2736.02Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB26_ARATH4.327e-2737.19Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB24_PETSP4.327e-2735.41Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB28_PEA5.652e-2736.40Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_CUCSA5.652e-2736.52Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934818 ID=CK934818; Name=CK934818; organism=Citrus sinensis; type=EST; length=898bp
GGGGATATTTTTTCATTAGCTACCCTTCTTCCACCACCACCACTCCTGCA
CTACGAGGCTCATAACTCTCGTCGGGAAACATGGCAACCGTCACAACACA
AGCCTCGGCCGCTGTGTTCCGGCCATGCGCATCCAAATCCAGGTTCCTTA
CTGGGTCTTCGGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGTGAGC
TCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGGGGAGTGGTTACCGGGCTT
GGCCTCGCCAACTTACCTCAACGGCAGCCTCCCCGGTGACAATGGATTTG
ACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTATGTGCAA
GCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTGGAATGTT
GTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGTTCCTCAATGGT
ATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCGTG
ATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGACAT
AAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAGTACAGCT
TGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCCACTCAAC
TTTGCACCCACTGATGAGGCAAAGGAGAAGGAGCTTGCCAATGGGAGATT
GGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAATGTGACAGGCA
AAGGGCCATTTGAAAACCTCCTGCAACATATCTCTGACCCATGGCACAAC
ACCATCGTCAGACACTTAGTGGTAATTAATCAAAGATGGATTGGCAATTC
GGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTGTAGTTTTTGAGT
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