CK934818
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.010e-24 Identity = 88/264 (33.33%), Postives = 122/264 (46.21%), Query Frame = 3 Query: 108 AAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPG-----------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK-IGI-INVPQWYDAGK-------AEYFA------SSSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 AA R +K+ FL+G G+ L+ ++++ + ++ + G +P+YLNG PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K +G+ P W+ AG +Y + S L V+ F +L VE R + G N YPGG F+PL A E K KE+ NGRLAM + GF VQ VTGKGP ENL H+ DP N Sbjct: 7 AAASRAVVAKTPFLSGQ-GRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND--------------LYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVAN 255
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.849e-24 Identity = 90/263 (34.22%), Postives = 127/263 (48.29%), Query Frame = 3 Query: 39 TTPALRGS*LSSGNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 758 T+P L G SS ++ V ++ A V + +S KL A S V+ G +L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAML V+G+ + + +T I W++AG A S TL + +L +VE +RW D +P S + + + +S E GYPGG F+PL+ A T + K E+ + RLAMLA L F + GK P Sbjct: 15 TSPFLSGGKKSSQSLLFVNSKVGAGV-----------STTSRKLVVVAAAAAPKKSWIPAVKGGGNFL----DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTP 255
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.303e-23 Identity = 79/204 (38.73%), Postives = 101/204 (49.51%), Query Frame = 3 Query: 255 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGK-------AEYFA------SSSTLFVIEF--ILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFA--PTD--EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 +P+YLNG PGD G+D GL+ DPE E+++ RWAMLG +G + PEV K ++ P W+ AG +Y + S L V+ F +L VE R + G N YPGG F+PL A PT E K KE+ NGRLAM + GF VQ VTGKGP ENLL H+ +P N Sbjct: 63 TPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND--------------LYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVAN 252
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23 Identity = 87/257 (33.85%), Postives = 123/257 (47.86%), Query Frame = 3 Query: 105 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS----------FKVEAKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 758 SAAV +S FLTG G ++ + P+++ AK W+P L P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG A S TL + IL +VE +RW D +P S + + + ++ E GYPGG F+PL A T + K E+ + RLAMLA L F + GK P Sbjct: 5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAG-QGKTP 250
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.791e-23 Identity = 83/243 (34.16%), Postives = 112/243 (46.09%), Query Frame = 3 Query: 153 GSSGKLNREVALKPVSSSAS-----FKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTK---IGIINVPQWYDAGKA-------EYFASSSTL--------FVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 G +GK ++ A K VS S+S + +A W P G PGD G+D GL+ DPE K Y + EL+++R +LG +GM+ PE+ I + W+ AG A Y + S + ++ +L VE R P DP+ YPG F+PL A E K KE+ NGRLAM A LGF VQ VTGKGP ENL H+++P N Sbjct: 34 GRAGKSTKKGA-KAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNG--GPAGEGLDPL------------YPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAEN 261
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 4.951e-23 Identity = 71/194 (36.60%), Postives = 97/194 (50.00%), Query Frame = 3 Query: 255 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 +P+YL G PGD G+D ++ DPE + E+++ RWAMLG +G + PE+ K G+ W+ AG A+ F+ + L H I W V + + Y + +G PGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 66 TPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAG-AQIFSEGGLDYAGNPNLIHAQSILAIWAC-----QVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 253
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.441e-22 Identity = 90/308 (29.22%), Postives = 125/308 (40.58%), Query Frame = 3 Query: 81 MATVTTQASAA------VFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIV 809 MA +T A+A+ V +S S T G ++ + K A + + W PG SP YL+GSL GD GFDP GL + E L++ + + EL++ RWAML +G + E T + W DAGK E SS TL IE ++ Y+E +R ++ + + YPGG F+PL A K + E+ + RLAM+ FLGF VQ TGKGP N H+SDP H TI+ Sbjct: 1 MAATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPK----KAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 281
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.457e-22 Identity = 79/250 (31.60%), Postives = 105/250 (42.00%), Query Frame = 3 Query: 237 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYV-------------------------------------------QAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGG-IFNPLNFAPTDEAKEK----ELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIV 809 W PG SP +L+GSL GD GFDP GL + E L++ + + EL++ RWAML +G L E T + W DAGK E SS TL IE ++ Y+E +R ++ + + YPGG F+PL A E + E+ + RLAM+AFLGF VQ TGKGP N H+SDP H TI+ Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGV------TWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRL-----------------YPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTII 284
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22 Identity = 86/259 (33.20%), Postives = 125/259 (48.26%), Query Frame = 3 Query: 90 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSS----ASFKVEAKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 758 +TT ++ AV +S FLTG + L V + + A+ V K W+P + S P +L+GSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V+G+ + + ++ I W++AG A S +L + +L +VE +RW D + S + D + ++ E GYPGG F+PL A T + K E+ + RLAMLA L F + GK P Sbjct: 1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAG-QGKTP 250
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.474e-22 Identity = 71/191 (37.17%), Postives = 93/191 (48.69%), Query Frame = 3 Query: 237 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTI 806 W P +P++LNG GD GFDP GLA DP+ + AE+ + R AML VVG L+P+ K GI WY+A + A +F + +F ++ N DP YPG F+PLN TD KE E+ NGRLA+ A LGF VQ +V G P NL +H+ P I Sbjct: 5 WFPNTLAPSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---------EVARGVKENSDP----------TTIYPG--FDPLNLT-TDYTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNI 167 The following BLAST results are available for this feature:
BLAST of CK934818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934818 ID=CK934818; Name=CK934818; organism=Citrus sinensis; type=EST; length=898bpback to top |