CK934818
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 4.634e-21 Identity = 78/231 (33.77%), Postives = 110/231 (47.62%), Query Frame = 3 Query: 174 REVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 R+ A K VSS + + + ++L + +P+YL G G L+ DPE + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S ++ + IL VE ++ P DPI YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 35 RKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.399e-19 Identity = 88/295 (29.83%), Postives = 121/295 (41.02%), Query Frame = 3 Query: 81 MATVTTQASAAVF-------RPCASKSRFLTGSS-GKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 758 MAT T A++ +F RP + + G S GK ++ A P S +V+ G+ W PG P +L+GS+ GD GFDP GL + E L++ + + EL++ RWAMLG +G + E T I W DAGK E SS TL IE ++ Y+E +R + L P + YPGG F+PL A D K E+ + RLAM+AFL F +Q TGKGP Sbjct: 1 MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGK--KKPAPPPKKSR---QVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-----------------LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 1.068e-17 Identity = 69/235 (29.36%), Postives = 99/235 (42.13%), Query Frame = 3 Query: 216 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------NLKWYVQA------------------------------ELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 770 K + WLP P +L+GSLPGD GFDPLGL++ E N K V+A EL++ RWAML +G L+ E T + W +AGK E +S + F + + W ++ G ++ P + YPGG+F+PL A DE K E+ + RLAM++F G+ VQ TG+G +L Sbjct: 46 KYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.631e-16 Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = 3 Query: 231 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 791 G W PG P +L G P D GFDPL +A DP +E+ ++R +ML +VG ++PE+ K W++ G +S + FIL + + G N D S YPG F+PL T + ++E+ NGRLAM LG Q+ TG+ P NL H ++P Sbjct: 160 GVWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANP 321
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.886e-14 Identity = 72/228 (31.58%), Postives = 102/228 (44.74%), Query Frame = 3 Query: 132 SKSRFLTGSSGKLNREVALKPVSSSASFKVEA----KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHI 782 S + +T L K SS+ +V+ GEW P+YL G PGD G+D GL+ PE + E+++SR AM +G + PE+ + +G W+ AG A+ F+ ++ L H I W + G+V I + + YPG F+ L A EA K KEL NGRLAM + GF VQ V+ K ENL H+ Sbjct: 30 SSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYLGPFSGEW------PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12 Identity = 62/211 (29.38%), Postives = 95/211 (45.02%), Query Frame = 3 Query: 81 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLP-GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA 671 MAT T Q SA + +P R + G+ G+++ +K S + + P +P+YL G PGD G+D GL+ DPE + E+++ RWAMLG +G + PE+ K G+ W+ AG ++ F ++ L H I W + G+V + Y + +G YPGG F+PL A EA Sbjct: 1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG-SQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV------EGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEA 204
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12 Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HI+DP +N Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12 Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL HI+DP +N Sbjct: 191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3 Query: 621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252 The following BLAST results are available for this feature:
BLAST of CK934818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934818 ID=CK934818; Name=CK934818; organism=Citrus sinensis; type=EST; length=898bpback to top |