CK934818

Overview
NameCK934818
Unique NameCK934818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.634e-21
Identity = 78/231 (33.77%), Postives = 110/231 (47.62%), Query Frame = 3
Query:  174 REVALKPVSSSASFKVEAKGEWLPGLA--SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            R+ A K VSS + +    + ++L   +  +P+YL G   G        L+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   35 RKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 243          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.399e-19
Identity = 88/295 (29.83%), Postives = 121/295 (41.02%), Query Frame = 3
Query:   81 MATVTTQASAAVF-------RPCASKSRFLTGSS-GKLNREVALKPVSSSASFKVEAKGE---WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKW-------------------------------------------YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPT----DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 758
            MAT T  A++ +F       RP   + +   G S GK  ++ A  P  S    +V+  G+   W PG   P +L+GS+ GD GFDP GL +  E L++                                           + + EL++ RWAMLG +G +  E  T I       W DAGK E    SS           TL  IE ++  Y+E +R  +                 L P +  YPGG F+PL  A      D  K  E+ + RLAM+AFL F +Q   TGKGP
Sbjct:    1 MATTTAAAASGIFGIRIQDPRPGTGRVQARFGFSFGK--KKPAPPPKKSR---QVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIA------WQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSE-----------------LDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.068e-17
Identity = 69/235 (29.36%), Postives = 99/235 (42.13%), Query Frame = 3
Query:  216 KVEAKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPE---------------NLKWYVQA------------------------------ELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 770
            K +    WLP    P +L+GSLPGD GFDPLGL++  E               N K  V+A                              EL++ RWAML  +G L+ E  T +       W +AGK E   +S     + F +   +    W ++   G       ++     P +  YPGG+F+PL  A  DE      K  E+ + RLAM++F G+ VQ   TG+G   +L
Sbjct:   46 KYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.631e-16
Identity = 60/187 (32.09%), Postives = 86/187 (45.99%), Query Frame = 3
Query:  231 GEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDP 791
            G W PG   P +L G  P D GFDPL +A DP        +E+ ++R +ML +VG ++PE+  K        W++ G      +S     + FIL        +   +  G  N D      S       YPG  F+PL    T +  ++E+ NGRLAM   LG   Q+  TG+ P  NL  H ++P
Sbjct:  160 GVWFPGAQPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK------GAWFEVG------NSVDGIKLGFILMAIAAPTEYW--RGNGGFNWDKGTADRS-------YPG--FDPLKL--TTDYTKREIKNGRLAMTGLLGLTFQYLATGESPLANLAAHFANP 321          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.886e-14
Identity = 72/228 (31.58%), Postives = 102/228 (44.74%), Query Frame = 3
Query:  132 SKSRFLTGSSGKLNREVALKPVSSSASFKVEA----KGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHI 782
            S +  +T     L      K  SS+   +V+      GEW      P+YL G  PGD G+D  GL+  PE      + E+++SR AM   +G + PE+ + +G       W+ AG A+ F+     ++    L H   I   W   +   G+V    I +       +  YPG  F+ L  A   EA    K KEL NGRLAM +  GF VQ  V+ K   ENL  H+
Sbjct:   30 SSTLIVTAGFTMLKHAAKSKVSSSTCDRRVKYLGPFSGEW------PSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYPGS-FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHL 249          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 62/211 (29.38%), Postives = 95/211 (45.02%), Query Frame = 3
Query:   81 MATVTTQASA----AVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKGEWLP-GLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA 671
            MAT T Q SA     + +P     R + G+ G+++    +K    S  +  +      P    +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  K G+      W+ AG ++ F      ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVGGNGGRVSMRRTIKSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAG-SQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAV------EGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEA 204          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.136e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:  191 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3
Query:  621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
The following BLAST results are available for this feature:
BLAST of CK934818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB22_SOYBN4.634e-2133.77Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB4C_ARATH7.399e-1929.83Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE1.068e-1729.36Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
LH15_EUGGR2.631e-1632.09Light-harvesting complex I LH35 proteins (Fragment... [more]
CB2_MALDO1.886e-1431.58Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_SILPR1.765e-1229.38Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2F_SOLLC5.136e-1257.81Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC5.136e-1257.81Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC8.760e-1256.25Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC8.760e-1256.25Chlorophyll a-b binding protein 1C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934818 ID=CK934818; Name=CK934818; organism=Citrus sinensis; type=EST; length=898bp
GGGGATATTTTTTCATTAGCTACCCTTCTTCCACCACCACCACTCCTGCA
CTACGAGGCTCATAACTCTCGTCGGGAAACATGGCAACCGTCACAACACA
AGCCTCGGCCGCTGTGTTCCGGCCATGCGCATCCAAATCCAGGTTCCTTA
CTGGGTCTTCGGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGTGAGC
TCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGGGGAGTGGTTACCGGGCTT
GGCCTCGCCAACTTACCTCAACGGCAGCCTCCCCGGTGACAATGGATTTG
ACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTATGTGCAA
GCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTGGAATGTT
GTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGTTCCTCAATGGT
ATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCGTG
ATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGACAT
AAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAGTACAGCT
TGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCCACTCAAC
TTTGCACCCACTGATGAGGCAAAGGAGAAGGAGCTTGCCAATGGGAGATT
GGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAATGTGACAGGCA
AAGGGCCATTTGAAAACCTCCTGCAACATATCTCTGACCCATGGCACAAC
ACCATCGTCAGACACTTAGTGGTAATTAATCAAAGATGGATTGGCAATTC
GGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTGTAGTTTTTGAGT
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