CK934818

Overview
NameCK934818
Unique NameCK934818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.760e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 3 
Query:  621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
[Close]
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 3 
Query:  621 YPGGIFNPLNFAPTDEAKE----KELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            YPG  F+PL  A   EAK     KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   74 YPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 137
[Close]
BLAST of CK934818 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3 
Query:  621 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 800
            YPGG F+PL      EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   48 YPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111
The following BLAST results are available for this feature:
BLAST of CK934818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2A_SOLLC8.760e-1256.25Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_PINSY7.416e-1154.69Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_RAPSA9.685e-1154.69Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934818 ID=CK934818; Name=CK934818; organism=Citrus sinensis; type=EST; length=898bp
GGGGATATTTTTTCATTAGCTACCCTTCTTCCACCACCACCACTCCTGCA
CTACGAGGCTCATAACTCTCGTCGGGAAACATGGCAACCGTCACAACACA
AGCCTCGGCCGCTGTGTTCCGGCCATGCGCATCCAAATCCAGGTTCCTTA
CTGGGTCTTCGGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGTGAGC
TCAAGCGCTTCTTTCAAAGTTGAAGCCAAGGGGGAGTGGTTACCGGGCTT
GGCCTCGCCAACTTACCTCAACGGCAGCCTCCCCGGTGACAATGGATTTG
ACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTATGTGCAA
GCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTGGAATGTT
GTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGTTCCTCAATGGT
ATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCGTG
ATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGACAT
AAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAGTACAGCT
TGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCCACTCAAC
TTTGCACCCACTGATGAGGCAAAGGAGAAGGAGCTTGCCAATGGGAGATT
GGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACAATGTGACAGGCA
AAGGGCCATTTGAAAACCTCCTGCAACATATCTCTGACCCATGGCACAAC
ACCATCGTCAGACACTTAGTGGTAATTAATCAAAGATGGATTGGCAATTC
GGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTGTAGTTTTTGAGT
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