CK934830

Overview
NameCK934830
Unique NameCK934830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VIBPA (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio parahaemolyticus GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 46/118 (38.98%), Postives = 72/118 (61.02%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +LR  L  LGP +IK GQ+++ R D+      + L +LQD V  F  ++A   +E+ LG PLE  F++   + +A+AS+ QV+ A L++T ++V +KV RP I P+I  DL L   +A
Sbjct:   56 RLRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQVAPFDGELAKQQMEKALGGPLENWFTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VIBHB (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            +LR  L  LGP +IK GQ+++ R D+      + L +LQD V  F  Q+A   +E  LG PL+  F++   + +A+AS+ QV+ A L++T ++V +KV RP I P+I  DL L   +AS
Sbjct:   56 RLRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLALLQDQVAPFDGQLAKEQMELALGGPLQNWFTEFDIKPLASASIAQVHTARLKDTNQEVVLKVIRPDIRPVIDSDLKLMHRMAS 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_PHOLL (Probable ubiquinone biosynthesis protein ubiB OS=Photorhabdus luminescens subsp. laumondii GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V SF   +A   IE  LG  LE  F       +A+AS+ QV+ A L+E G+++ IKV RP I PII  D+ L   LA++
Sbjct:   56 RLRLALQELGPVWIKFGQMLSTRRDLFPPAIADQLALLQDRVASFDGALARQYIETALGGALETWFDDFEPIALASASIAQVHTARLKENGQEIVIKVIRPDILPIIKADIRLMYRLANW 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_ALISL (Probable ubiquinone biosynthesis protein ubiB OS=Aliivibrio salmonicida (strain LFI1238) GN=ubiB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.766e-16
Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  451 GLYWSNLTYDCLVGRDKEVVPDR--ARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            GL+W    Y           P++    +LR  L  LGP +IK GQ+++ R D+      ++L +LQD V  F  Q+A + +E  LG PLE  F+      +A+AS+ QV+ A L+E+G ++ +KV RP I P+I  D+ L   +A+
Sbjct:   40 GLFWIKNRY-----------PEKPLGERLRLALQELGPVWIKFGQMMSTRRDLFPPHLADQLALLQDQVAPFDGQLAKDQMELSLGGPLENWFTDFDIVPLASASIAQVHTAKLKESGREIVLKVIRPDIRPVIEADIRLMYRMAT 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANOR (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas oryzae pv. oryzae GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  508 VPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATL----RETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            V  R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  + A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   48 VQSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANOP (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  508 VPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATL----RETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            V  R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  + A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   48 VQSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANOM (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 1
Query:  508 VPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATL----RETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            V  R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  + A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   48 VQSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVERALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XANC5 (Probable ubiquinone biosynthesis protein ubiB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATL----RETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            R  +LR  L  LGP F+K GQ+L+ R D++  D   EL +LQD V  F  Q A  I+E  LG P+   F+   +  +A+AS+ QV+ ATL         +V +KV RP IE  I  D+ L  +LA+
Sbjct:   51 RGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVEAALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPDIERQIDADIALLHSLAT 176          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VIBCM (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio cholerae serotype O1 (strain M66-2) GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +LR  L  LGP +IK GQ+++ R D+      + L +LQD V  F    A  +IEEELG PLE  F     + +A+AS+ QV+ A L+  G DV +KV RP I P I  D+ L   +A
Sbjct:   56 RLRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAPLETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VIBCH (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio cholerae GN=ubiB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +LR  L  LGP +IK GQ+++ R D+      + L +LQD V  F    A  +IEEELG PLE  F     + +A+AS+ QV+ A L+  G DV +KV RP I P I  D+ L   +A
Sbjct:   56 RLRLALQELGPVWIKFGQMMSTRRDLFPPHIADPLAMLQDKVAPFDGLQAKQLIEEELGAPLETWFDDFDIKPLASASIAQVHTAKLKSNGRDVVLKVIRPDIRPQIDADIKLMYRVA 173          
The following BLAST results are available for this feature:
BLAST of CK934830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_VIBPA5.766e-1638.98Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_VIBHB5.766e-1639.50Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_PHOLL5.766e-1641.67Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_ALISL5.766e-1634.93Probable ubiquinone biosynthesis protein ubiB OS=A... [more]
UBIB_XANOR7.530e-1638.76Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANOP7.530e-1638.76Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANOM7.530e-1638.76Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XANC57.530e-1639.68Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_VIBCM7.530e-1641.53Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_VIBCH7.530e-1641.53Probable ubiquinone biosynthesis protein ubiB OS=V... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934830 ID=CK934830; Name=CK934830; organism=Citrus sinensis; type=EST; length=885bp
GGGGGACCTGGCCCTTGGTACTTTCGTTTCTCACCAAAATCACTCGCTCG
CTCCGTCTTATCAACCATGGATTTGATTAATCCGAATTGCATAAACTCAC
TCGTTTTCTCTACAAACAAGCATCGCCAAACGAACAAGTGCAGAAATGTA
TTTTCCACCTCCAAGGAATCTTCGTTTCGGTTATCAACGGCGCCACAGAG
AAGCGAGAGATTCTCAACTTCAATCTCGGCGAGTGATGCTTCAGTTAACG
GTGTAACGACGACGCCAGCGGATAAGAGATCGTTGGAATTAGTGAAATCC
AGTAAAGCGATGGAGCAATTAGACATCGAACGCGGCGTTTGCGTGCCGTT
TCGCAAGTACACGCCTGAAACAGTGAGGAACAAGGTATTGGAATCTAGAG
GGGCTGTAATTTCTCTAATGTCACGTGGAGTGGAGATAGTATGGAGTTTG
GGATTGTATTGGTCTAATTTGACGTATGATTGTTTGGTTGGAAGAGACAA
AGAGGTTGTTCCTGATCGTGCTCGCCAACTTCGGAATCTCTTGTGTAATT
TGGGGCCTTCCTTTATCAAAGCTGGGCAGGTGCTTGCGAACAGGCCTGAT
ATTGTAAGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGT
CCCCTCTTTTCCAAATCAGGTTGCTTTTAACATTATAGAAGAGGAATTGG
GTCGACCTCTGGAAGCTGTCTTCAGCAAAATTTCTTCACAGACAATAGCG
GCTGCAAGTCTGGGTCAAGTTTACCGAGCCACCCTGCGTGAAACAGGGGA
GGACGTTGCTATTAAGGTGCAAAGGCCTGGGATAGAGCCCATAATCTACC
GAGATCTTTTTCTTTTCAGAACTCTTGCTTCATTC
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