CK934830

Overview
NameCK934830
Unique NameCK934830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VARPS (Probable ubiquinone biosynthesis protein ubiB OS=Variovorax paradoxus (strain S110) GN=ubiB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 1
Query:  487 VGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLR-ETGE--DVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +GR+ +    R ++LR  L  LGP F+K GQVL+ R D++  D  +EL  LQD VP FP+ VA   IE    RP+  VF +     IA+AS+ QV+ AT+R + GE  +VA+KV RP +  +I +DL L   +A +
Sbjct:   41 IGRNLDA--PRGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERAFRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALMAMMAGW 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHESR (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain MR-7) GN=ubiB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F   +A   IE EL  P+E+ F   +   +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  DL L    A
Sbjct:   45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGALARQAIEAELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHESM (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain MR-4) GN=ubiB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F   +A   IE EL  P+E+ F   +   +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  DL L    A
Sbjct:   45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGALARQAIETELKAPIESFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVEAKIQADLLLMSQTA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHESA (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain ANA-3) GN=ubiB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ NEL +LQD VP F   +A   IE EL  P+E+ F       +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  DL L    A
Sbjct:   45 RNKHKGKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWANELAMLQDKVPPFDGALARQAIEAELKAPIESYFDDFDETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEB5 (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=ubiB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F   +A   IE EL  P+E++F   +   +A+AS+ QV+ ATL+  G+DV +KV RP +E  I  DL L    A
Sbjct:   45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGALARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEB2 (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella baltica (strain OS223) GN=ubiB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            R+K        +L+  +  LGP +IK GQ+L+ R D++ +++ +EL +LQD VP F   +A   IE EL  P+E++F   +   +A+AS+ QV+ ATL+  G+DV +KV RP +E  I  DL L    A
Sbjct:   45 RNKHKNKPGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWASELAMLQDKVPPFDGALARQAIEAELKAPIESLFDDFNEIPLASASISQVHTATLKSNGKDVVLKVLRPNVETKIQADLQLMSQTA 173          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_EDWI9 (Probable ubiquinone biosynthesis protein ubiB OS=Edwardsiella ictaluri (strain 93-146) GN=ubiB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.504e-19
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F   +A   IE  LG PLE  F    SQ +A+AS+ QV+ ATLRE G +V +KV RP I+PII  D+ L   LA +
Sbjct:   56 RLRLALQTLGPVWIKFGQMLSTRRDLFAPAIADQLALLQDRVAPFDGALARRQIEASLGGPLEQWFDDFDSQALASASIAQVHTATLRENGREVVLKVIRPDIQPIIRADVRLMYRLAGW 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEPA (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.241e-18
Identity = 47/120 (39.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A   IE+EL  P+E  F+      +A+AS+ QV+ ATL+  G  V +KV RP +E  ++ DL L    A F
Sbjct:   56 RLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEKELNAPIERYFNDFDDTPLASASISQVHTATLKSNGAAVVLKVLRPDVEKKVHADLLLMSQAADF 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_BURPP (Probable ubiquinone biosynthesis protein ubiB OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.621e-18
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  487 VGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLR---ETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +GR  +  P    +LR  L +LGP F+K GQVL+ R D++  D  +EL  LQD VP F + VA  ++E  LG P++ +F       +A+AS+ QV+ AT++     G+ VA+KV RP + P+I  DL L R +A
Sbjct:   40 IGRKFDAPP--GVRLRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAPVDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFM (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain M12) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 55/126 (43.65%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  505 VVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            V   R R+LR  L  LGP F+K GQ+L+ R D+V +D  +EL +LQD V  F  Q A  IIE  LG+ +E+ F+   +  +A+AS+ QV+ ATL +  E V +KV RP IE  I  D+ L ++LA+
Sbjct:   47 VEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARIIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDRRE-VVVKVLRPDIEHQISDDIALLKSLAT 171          
The following BLAST results are available for this feature:
BLAST of CK934830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_VARPS7.277e-1941.91Probable ubiquinone biosynthesis protein ubiB OS=V... [more]
UBIB_SHESR7.277e-1938.76Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHESM7.277e-1938.76Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHESA9.504e-1938.76Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEB59.504e-1938.76Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEB29.504e-1938.76Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_EDWI99.504e-1945.00Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_SHEPA1.241e-1839.17Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_BURPP1.621e-1840.30Probable ubiquinone biosynthesis protein ubiB OS=B... [more]
UBIB_XYLFM2.117e-1843.65Probable ubiquinone biosynthesis protein ubiB OS=X... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934830 ID=CK934830; Name=CK934830; organism=Citrus sinensis; type=EST; length=885bp
GGGGGACCTGGCCCTTGGTACTTTCGTTTCTCACCAAAATCACTCGCTCG
CTCCGTCTTATCAACCATGGATTTGATTAATCCGAATTGCATAAACTCAC
TCGTTTTCTCTACAAACAAGCATCGCCAAACGAACAAGTGCAGAAATGTA
TTTTCCACCTCCAAGGAATCTTCGTTTCGGTTATCAACGGCGCCACAGAG
AAGCGAGAGATTCTCAACTTCAATCTCGGCGAGTGATGCTTCAGTTAACG
GTGTAACGACGACGCCAGCGGATAAGAGATCGTTGGAATTAGTGAAATCC
AGTAAAGCGATGGAGCAATTAGACATCGAACGCGGCGTTTGCGTGCCGTT
TCGCAAGTACACGCCTGAAACAGTGAGGAACAAGGTATTGGAATCTAGAG
GGGCTGTAATTTCTCTAATGTCACGTGGAGTGGAGATAGTATGGAGTTTG
GGATTGTATTGGTCTAATTTGACGTATGATTGTTTGGTTGGAAGAGACAA
AGAGGTTGTTCCTGATCGTGCTCGCCAACTTCGGAATCTCTTGTGTAATT
TGGGGCCTTCCTTTATCAAAGCTGGGCAGGTGCTTGCGAACAGGCCTGAT
ATTGTAAGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGT
CCCCTCTTTTCCAAATCAGGTTGCTTTTAACATTATAGAAGAGGAATTGG
GTCGACCTCTGGAAGCTGTCTTCAGCAAAATTTCTTCACAGACAATAGCG
GCTGCAAGTCTGGGTCAAGTTTACCGAGCCACCCTGCGTGAAACAGGGGA
GGACGTTGCTATTAAGGTGCAAAGGCCTGGGATAGAGCCCATAATCTACC
GAGATCTTTTTCTTTTCAGAACTCTTGCTTCATTC
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