CK934830

Overview
NameCK934830
Unique NameCK934830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEPW (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=ubiB PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.117e-18
Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A   IE+EL  P+E  F       +A+AS+ QV+ ATL+  G  V +KV RP +E  ++ D+ L    A+F
Sbjct:   56 RLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARESIEQELNAPIETYFDDFEDTPLASASISQVHTATLKSNGAKVVLKVLRPDVEQKVHADIQLMSQAANF 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: Y095_SYNY3 (Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC 6803) GN=sll0095 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.765e-18
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFL 864
            RA+ L   L  LGP+FIK GQ L+ R DI+  +Y+     LQD VP F ++ A  +IE+EL   ++ +F +     +A+ASLGQV+RA L  TGE V +KVQRPG++ ++  D  L
Sbjct:   57 RAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIAVIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVL-PTGEAVVVKVQRPGLDSLLNLDFEL 171          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFT (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.765e-18
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  505 VVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            V   R R+LR  L  LGP F+K GQ+L+ R D+V +D  +EL +LQD V  F  Q A +IIE  LG+ +E+ F+   +  +A+AS+ QV+ ATL +    V +KV RP IE  I  D+ L ++LA+
Sbjct:   47 VEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDR-RAVVVKVLRPDIEHQISDDIALLKSLAT 171          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_XYLF2 (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain M23) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.765e-18
Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1
Query:  505 VVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            V   R R+LR  L  LGP F+K GQ+L+ R D+V +D  +EL +LQD V  F  Q A +IIE  LG+ +E+ F+   +  +A+AS+ QV+ ATL +    V +KV RP IE  I  D+ L ++LA+
Sbjct:   47 VEQSRGRRLRLALQELGPIFVKFGQILSTRRDLVPQDIGDELVMLQDRVEPFEGQTARSIIETALGKSVESAFAHFDTVPLASASISQVHAATLHDR-RAVVVKVLRPDIEHQISDDIALLKSLAT 171          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEFN (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella frigidimarina (strain NCIMB 400) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.765e-18
Identity = 49/130 (37.69%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            R+K      A +L+  + +LGP +IK GQ+L+ R D++ +++  +L +LQD VP F + +A   IE ELG P+   F   +   +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  DL L    A+
Sbjct:   45 RNKHKTKSPAERLKLAMQDLGPVYIKLGQMLSTRRDLLDDEWAYQLAMLQDRVPPFDSALAREAIEAELGAPIATYFDDFNDTPLASASISQVHTATLKSNGKAVVLKVLRPNVEQQILADLQLMTQTAN 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEWM (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 46/120 (38.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +L+ ++  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A  +IE ELG  ++  F    +  +A+AS+ QV+ ATL+  G+ V +KV RP +E  +  DL L    A+F
Sbjct:   56 RLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIAREMIELELGTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDADLHLMSQAANF 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEHH (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 46/120 (38.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F + +A   IE EL  P+E+ F+      +A+AS+ QV+ ATL+  G  V +K+ RP +E  ++ DL L    A F
Sbjct:   56 RLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIARASIETELNAPIESYFNDFDDIPLASASISQVHTATLKSNGAAVVLKILRPDVEQKVHADLLLMSQAADF 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEAM (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 46/120 (38.33%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLASF 885
            +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP+F + +A   IE EL  P++++F       +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  DL L   +A++
Sbjct:   56 RLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSALAREAIEAELKAPIDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIKADLELMLQVATW 175          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_DELAS (Probable ubiquinone biosynthesis protein ubiB OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  517 RARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETG---EDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            R ++LR  L  LGP F+K GQVL+ R D++  D   EL  LQD VP F +Q+A + IE    + L+ +F     + +A+AS+ QV+ A + +      DVA+KV RPG++ +I +DL L   +A
Sbjct:   49 RGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIERAFRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLALMHMMA 172          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SHEON (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella oneidensis GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.051e-17
Identity = 49/129 (37.98%), Postives = 73/129 (56.59%), Query Frame = 1
Query:  493 RDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            R+K        +L+  +  LGP +IK GQ+L+ R D++ +++  EL +LQD VP F   +A   IE EL  P+E  F   +   +A+AS+ QV+ ATL+  G+ V +KV RP +E  I  DL L    A
Sbjct:   45 RNKHKDKSGGERLKLAMQELGPVYIKLGQMLSTRRDLLSDEWATELAMLQDKVPPFDGALARLAIEAELKAPIETFFDDFNETPLASASISQVHTATLKSNGKAVVLKVLRPNVETKIQADLLLMSQTA 173          
The following BLAST results are available for this feature:
BLAST of CK934830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_SHEPW2.117e-1838.33Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
Y095_SYNY32.765e-1843.97Uncharacterized protein sll0095 OS=Synechocystis s... [more]
UBIB_XYLFT2.765e-1842.86Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XYLF22.765e-1842.86Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_SHEFN2.765e-1837.69Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEWM4.717e-1838.33Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEHH4.717e-1838.33Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHEAM8.045e-1838.33Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_DELAS8.045e-1839.52Probable ubiquinone biosynthesis protein ubiB OS=D... [more]
UBIB_SHEON1.051e-1737.98Probable ubiquinone biosynthesis protein ubiB OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934830 ID=CK934830; Name=CK934830; organism=Citrus sinensis; type=EST; length=885bp
GGGGGACCTGGCCCTTGGTACTTTCGTTTCTCACCAAAATCACTCGCTCG
CTCCGTCTTATCAACCATGGATTTGATTAATCCGAATTGCATAAACTCAC
TCGTTTTCTCTACAAACAAGCATCGCCAAACGAACAAGTGCAGAAATGTA
TTTTCCACCTCCAAGGAATCTTCGTTTCGGTTATCAACGGCGCCACAGAG
AAGCGAGAGATTCTCAACTTCAATCTCGGCGAGTGATGCTTCAGTTAACG
GTGTAACGACGACGCCAGCGGATAAGAGATCGTTGGAATTAGTGAAATCC
AGTAAAGCGATGGAGCAATTAGACATCGAACGCGGCGTTTGCGTGCCGTT
TCGCAAGTACACGCCTGAAACAGTGAGGAACAAGGTATTGGAATCTAGAG
GGGCTGTAATTTCTCTAATGTCACGTGGAGTGGAGATAGTATGGAGTTTG
GGATTGTATTGGTCTAATTTGACGTATGATTGTTTGGTTGGAAGAGACAA
AGAGGTTGTTCCTGATCGTGCTCGCCAACTTCGGAATCTCTTGTGTAATT
TGGGGCCTTCCTTTATCAAAGCTGGGCAGGTGCTTGCGAACAGGCCTGAT
ATTGTAAGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGT
CCCCTCTTTTCCAAATCAGGTTGCTTTTAACATTATAGAAGAGGAATTGG
GTCGACCTCTGGAAGCTGTCTTCAGCAAAATTTCTTCACAGACAATAGCG
GCTGCAAGTCTGGGTCAAGTTTACCGAGCCACCCTGCGTGAAACAGGGGA
GGACGTTGCTATTAAGGTGCAAAGGCCTGGGATAGAGCCCATAATCTACC
GAGATCTTTTTCTTTTCAGAACTCTTGCTTCATTC
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