CK934830

Overview
NameCK934830
Unique NameCK934830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALPK (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella paratyphi A (strain AKU_12601) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALPC (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella paratyphi C (strain RKS4594) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALPB (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALPA (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella paratyphi A GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALNS (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella newport (strain SL254) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALHS (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella heidelberg (strain SL476) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALDC (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella dublin (strain CT_02021853) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALCH (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella choleraesuis GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_SALA4 (Probable ubiquinone biosynthesis protein ubiB OS=Salmonella agona (strain SL483) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.162e-16
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  439 VWSLGLYWS-NLTYDCLVGRDKEVVPDRARQLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGR-PLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLA 879
            +W   L+W  N   D L+G           +LR  L  LGP +IK GQ+L+ R D+      ++L +LQD V  F  ++A   IEE +G  P+EA F     Q +A+AS+ QV+ A L+  G++V IKV RP I P+I  DL L   LA
Sbjct:   36 LWRYSLFWMPNRHKDKLLGE----------RLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDGRLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIQADLKLIYRLA 174          
BLAST of CK934830 vs. ExPASy Swiss-Prot
Match: UBIB_VIBVY (Probable ubiquinone biosynthesis protein ubiB OS=Vibrio vulnificus (strain YJ016) GN=ubiB PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.517e-16
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  526 QLRNLLCNLGPSFIKAGQVLANRPDIVREDYMNELCILQDDVPSFPNQVAFNIIEEELGRPLEAVFSKISSQTIAAASLGQVYRATLRETGEDVAIKVQRPGIEPIIYRDLFLFRTLAS 882
            +LR  L  LGP +IK GQ+L+ R D+      + L +LQD V  F   +A   +E+ LG PLE  FS      +A+AS+ QV+ A L+ T ++V +KV RP I PII  DL L R +AS
Sbjct:   56 RLRLALQELGPVWIKFGQMLSTRRDLFPPHIADPLALLQDQVSPFDGALAKAQMEQALGGPLETWFSDFDLVPLASASIAQVHTAKLKTTNQEVVLKVIRPDIRPIIDADLKLMRRMAS 174          
The following BLAST results are available for this feature:
BLAST of CK934830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_SALPK1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALPC1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALPB1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALPA1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALNS1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALHS1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALDC1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALCH1.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SALA41.162e-1638.93Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_VIBVY1.517e-1642.86Probable ubiquinone biosynthesis protein ubiB OS=V... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004226_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934830 ID=CK934830; Name=CK934830; organism=Citrus sinensis; type=EST; length=885bp
GGGGGACCTGGCCCTTGGTACTTTCGTTTCTCACCAAAATCACTCGCTCG
CTCCGTCTTATCAACCATGGATTTGATTAATCCGAATTGCATAAACTCAC
TCGTTTTCTCTACAAACAAGCATCGCCAAACGAACAAGTGCAGAAATGTA
TTTTCCACCTCCAAGGAATCTTCGTTTCGGTTATCAACGGCGCCACAGAG
AAGCGAGAGATTCTCAACTTCAATCTCGGCGAGTGATGCTTCAGTTAACG
GTGTAACGACGACGCCAGCGGATAAGAGATCGTTGGAATTAGTGAAATCC
AGTAAAGCGATGGAGCAATTAGACATCGAACGCGGCGTTTGCGTGCCGTT
TCGCAAGTACACGCCTGAAACAGTGAGGAACAAGGTATTGGAATCTAGAG
GGGCTGTAATTTCTCTAATGTCACGTGGAGTGGAGATAGTATGGAGTTTG
GGATTGTATTGGTCTAATTTGACGTATGATTGTTTGGTTGGAAGAGACAA
AGAGGTTGTTCCTGATCGTGCTCGCCAACTTCGGAATCTCTTGTGTAATT
TGGGGCCTTCCTTTATCAAAGCTGGGCAGGTGCTTGCGAACAGGCCTGAT
ATTGTAAGAGAAGATTATATGAATGAACTCTGCATTCTTCAAGATGATGT
CCCCTCTTTTCCAAATCAGGTTGCTTTTAACATTATAGAAGAGGAATTGG
GTCGACCTCTGGAAGCTGTCTTCAGCAAAATTTCTTCACAGACAATAGCG
GCTGCAAGTCTGGGTCAAGTTTACCGAGCCACCCTGCGTGAAACAGGGGA
GGACGTTGCTATTAAGGTGCAAAGGCCTGGGATAGAGCCCATAATCTACC
GAGATCTTTTTCTTTTCAGAACTCTTGCTTCATTC
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