CK934922

Overview
NameCK934922
Unique NameCK934922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934922 vs. ExPASy Swiss-Prot
Match: RDGC_DROME (Serine/threonine-protein phosphatase rdgC OS=Drosophila melanogaster GN=rdgC PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.924e-18
Identity = 59/199 (29.65%), Postives = 98/199 (49.25%), Query Frame = 3
Query:    6 RGNHESRQITQVYGFYDECLRKY--GNANVWKHFADLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGP---------------MCDLLWSDPDDRCGWGISP-RGAGYTFGQDIASQFNHTNGLTLISRAHQLVMDGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQ 548
            RGNHE   +   YGF  E   KY   +  +     +++ +LPL +++ S+V  +HGG S S  +LD I+++DR + V    P               + D++WSDP    G   +  RGAG  FG D+   F   + L+ + R+H+   +G+ +  D  ++T+FSA NY     N  A + +   +  +F+Q+  A  Q
Sbjct:  217 RGNHEDSVMNARYGFIREVESKYPRNHKRILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDST-SLDLIKSIDRGKYVSILRPPLTDGEPLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIRSHECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFVQYISAASQ 414          
BLAST of CK934922 vs. ExPASy Swiss-Prot
Match: PPP7_ARATH (Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 63/203 (31.03%), Postives = 92/203 (45.32%), Query Frame = 3
Query:    3 VRGNHESRQITQVYGFYDECLRKYGN--ANVWKHFADLFDYLPLTALIESQVFCLHGGL---------------------------SPSLDTLDNI-RALDRIQEVPHEGPMC---DLLWSDPDDRCGWGISP---RGAGYTFGQDIASQFNHTNGLTLISRAHQ------------LVMDGY---NWCQDKNVVTVFSAPNY 458
            +RGNHES+  T +YGF  E L KYG+   +V++     F+ LPL ++I  +V+  HGGL                           S  L TLD + +A   + + P EG      D+LWSDP      G+SP   RG G  +G D    F     L LI R+H+             + +GY   +  +   ++T+FSAP+Y
Sbjct:  142 LRGNHESKYCTSMYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIISGRVYTAHGGLFRSPVLPKRTTRGKKNRRVVLLEPEPSSMKLGTLDELMQARRSVLDPPWEGSNLIPGDVLWSDPS--MTPGLSPNEQRGIGLLWGPDCTEDFLKKYELKLIIRSHEGPDAREKRTGLGGMDNGYTIDHNVESGKLITIFSAPDY 342          
The following BLAST results are available for this feature:
BLAST of CK934922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RDGC_DROME1.924e-1829.65Serine/threonine-protein phosphatase rdgC OS=Droso... [more]
PPP7_ARATH1.578e-1231.03Serine/threonine-protein phosphatase 7 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004225_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IVF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934922 ID=CK934922; Name=CK934922; organism=Citrus sinensis; type=EST; length=834bp
GGGTGAGGGGAAATCATGAGAGTCGTCAGATAACTCAAGTGTATGGATTT
TATGATGAATGTTTGAGAAAATATGGAAATGCTAATGTCTGGAAGCATTT
CGCTGACCTTTTTGATTATCTGCCACTTACAGCTCTAATTGAGAGTCAGG
TTTTCTGCTTGCACGGAGGACTTTCCCCATCTTTGGATACATTAGATAAT
ATACGTGCTCTGGACCGTATACAGGAGGTTCCTCATGAGGGCCCGATGTG
TGATCTCTTATGGTCTGATCCCGACGATCGATGTGGATGGGGAATATCTC
CTCGGGGTGCTGGGTACACATTTGGGCAGGATATAGCTTCACAGTTCAAC
CATACTAATGGGCTGACTCTTATTTCTAGAGCTCACCAGCTCGTAATGGA
CGGATACAATTGGTGCCAAGACAAGAATGTGGTGACAGTGTTCAGTGCAC
CAAATTACTGCTACCGGTGTGGAAATATGGCTGCAATTCTTGAGATTGGG
GAGAATATGGAGCAGAATTTTCTTCAATTTGACCCGGCGCCTCGTCAAAT
TGAGCCTGACACCACACGCAGGACTCCCGACTATTTTTTGTGATTGCCAT
GGATTCCACTGGTGAATTTTGTTCTTTAATGTTGTGTTTTTGTAGATGTC
TCTTACAAAAACTGAGTTATTGTTTTTAGTCAAAGGAGAGACAAGACGAA
GCCATTGTTCTTGTCATTCTTTTGATCGAAGTTTTTATGATGCTGGGTTC
ATGTGAGTTTATAGGTCCGATCTGTAGTAGCTTCTTTTGTATTCTAAAAT
GGGAAGAAAAATGGAATGTCATGCTGTGTTGACG
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