CK934995

Overview
NameCK934995
Unique NameCK934995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.827e-56
Identity = 110/190 (57.89%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   75 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 644
            MKTILS++T+DIP+ V + +  + + V+GPRG L RDF H+N++  L+  +   K++L++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNFLGEK +R+V M  GV    S   KDEL+L GNDIELVS SAALI Q   VKNKDIRKFLDGIYVSEK T+
Sbjct:    1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKK---KKRLRVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9_DROME (60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.185e-55
Identity = 107/191 (56.02%), Postives = 138/191 (72.25%), Query Frame = 3
Query:   75 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 647
            M+TI S++ + IP  +K  + A+V+ + G RG L R FKHL LD ++       KR LK++ WFG++K  AA+RT  SH+ N+I GVT G++YKMR VYAHFPIN     NN  IEIRNFLGEK +R+V+M  GVTV+ S   KDEL+++GNDIE VS SAALI Q   VKNKDIRKFLDG+YVSEK+T++
Sbjct:    1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYM-----PDKRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9_SPOFR (60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.547e-55
Identity = 107/194 (55.15%), Postives = 142/194 (73.20%), Query Frame = 3
Query:   75 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTILGEE 656
            MK I++++ + IP+G+ V + ++++ V+GPRG L R+FKHL +D  ++       R LK++ WFGS+K  AA+RT  SHV N+I GVTKG++YKMR VYAHFPIN      N  IEIRNFLGEK +R+V M  GVTV+ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVSEK+T+  +E
Sbjct:    1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-----RVLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVEVDE 189          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9_DICDI (60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 4.213e-53
Identity = 98/190 (51.58%), Postives = 138/190 (72.63%), Query Frame = 3
Query:   75 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 644
            MK I SS  + IP+ V V +  + ++V GPRG LS+ F H ++D +L+     GK++L +D WFG+RK  A I+T  S + N+ITGVTKGY YKMRFVYAHFPIN ++ +  + +EIRNF GEK VR++++LDG+T  R++K KDE+VL GN +EL+S+S A I  +  +K KD+RKFLDGIYVSE++ +
Sbjct:    1 MKVINSSRKVQIPENVTVDVKGRSVKVTGPRGTLSKSFDHASVDINLV-----GKKELTVDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSERNVL 185          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.355e-51
Identity = 100/191 (52.36%), Postives = 136/191 (71.20%), Query Frame = 3
Query:   75 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 647
            MK I S++T+  P+GV   +  +++ V GPRG + +DF+HL+++      E  GK  L++  WFG RK  AAIRT  SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNFLGEK VR+V + +GV    S   KDE+V++GND++ VS++AA I Q   VK KDIRKFLDGIYVSEK+TI+
Sbjct:    1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEM-----ERIGKSTLRVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.124e-48
Identity = 99/193 (51.30%), Postives = 137/193 (70.98%), Query Frame = 3
Query:   75 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTIL 647
            MK I + + ++IP+GV V I +++++V GPRG L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I+
Sbjct:    1 MKYIQTEQQIEIPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.329e-48
Identity = 98/192 (51.04%), Postives = 136/192 (70.83%), Query Frame = 3
Query:   75 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 644
            MK I + + +++P+GV V I +++++V GPRG L+++ KH+++ F      +   + +K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNFLG+KK+R V + DGVT+  S  VKDE+VL GN +E VS++AA + Q C V+NKDIRKFLDGIYVS K  I
Sbjct:    1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTF-----TKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFI 187          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.025e-47
Identity = 95/189 (50.26%), Postives = 130/189 (68.78%), Query Frame = 3
Query:   78 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 644
            + I   ET+ IP+GV V I A+++ V+GPRG L ++ + ++++     +       +K   W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++++GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:    3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQGNT------IKFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.313e-46
Identity = 95/189 (50.26%), Postives = 127/189 (67.20%), Query Frame = 3
Query:   78 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKSTI 644
            + I   ET+ IP GV V I A+ + V GPRG L ++ +H++++     +       +K   W GSRK +A IR+  S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNFLGE+  R +  L GVTV  S  VKDE++L+GN +E VS+SAA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:    3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQGNT------IKFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.429e-37
Identity = 82/188 (43.62%), Postives = 125/188 (66.49%), Query Frame = 3
Query:   78 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHL-NLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            K +  +E + +P+GV+V I+   + V+GP+G+L+RDF H  N+   L  DEE   +K+ ++A+F +R+  A + T  +H+ N+ITGVTKG+RYK++ VY+HFP+   +  +   IE  NFLGEK  R   ++ GVTV    KV KD+++++G DIE V ++AA I Q   VK+KD R F+DGIY+ EK
Sbjct:    3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEG--KKVVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182          
The following BLAST results are available for this feature:
BLAST of CK934995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL9_PONAB1.827e-5657.8960S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_DROME1.185e-5556.0260S ribosomal protein L9 OS=Drosophila melanogaste... [more]
RL9_SPOFR1.547e-5555.1560S ribosomal protein L9 OS=Spodoptera frugiperda ... [more]
RL9_DICDI4.213e-5351.5860S ribosomal protein L9 OS=Dictyostelium discoide... [more]
RL9_CAEEL1.355e-5152.3660S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_YEAST3.124e-4851.3060S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST5.329e-4851.0460S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL9B_SCHPO2.025e-4750.2660S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO1.313e-4650.2660S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL6_HYPBU9.429e-3743.6250S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004224_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934995 ID=CK934995; Name=CK934995; organism=Citrus sinensis; type=EST; length=853bp
GGGGAGGGTTTTGCGGCATCTCTAGCTTAAGCGTAGGAGGAGAAGAANNN
NGAAGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGAC
TATGGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTG
AAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAAC
CTCGACTTCCATCTCATGACTGACGAGGAAGCCGGTAAGCGCAAGCTTAA
GATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTG
CCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGC
TACAAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGG
TAACAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGG
TTCGAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAG
GTTAAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCG
CTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACATTA
GGAAATTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGA
GAAGAATGATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATGAA
TTTTTTTTTAAATCTTTTTAATTTTGCCTCTTACTTTGAGTTGAGGACAT
GCTTTTGGTTGTATTTGGGATTTGGGACTTGGGAGTTCTAGATTTCAATT
TTATGTCTTCAATTGCTATCATCACAATATATGTATGGATTTTATAGCTA
TGC
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