CK934995
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.009e-24 Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 L E ++IP+ V V+IN + V+ +L R+ + ++ E GK + I+ F + +A + T SH+ N+ITGVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +++V+ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI----STEDGK--VVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.009e-24 Identity = 65/180 (36.11%), Postives = 99/180 (55.00%), Query Frame = 3 Query: 102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 + IP GV V ++ V+ V+GP+G L RD + ++ + G ++ + ++ + T SH N+ TGVTKGY Y M+ VY+HFPI + + +EI NFLGEK R +L G TV KV DE+ + G D E+V +AA I + ++++D R F DGIY+ +S Sbjct: 7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.561e-23 Identity = 69/184 (37.50%), Postives = 101/184 (54.89%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 L E ++IP V V+IN + V+ +L RD + ++ E GK + I+ F + +A + T SH+ N+I GVT G+ YK+ YAHFP+ S N + I NFLGEK R ++DGVTV S +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI----STEDGK--VVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 2.039e-23 Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = 3 Query: 96 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 E ++IP+GV+V IN + V+GP G+ SR F + N+D +T+ E + ++ F +K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N + I NFLGE+ R ++ V+ DE+ + G + E V ++ A + Q +K +D R F DGIY+ K Sbjct: 9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVE---NNVVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22 Identity = 65/182 (35.71%), Postives = 102/182 (56.04%), Query Frame = 3 Query: 93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 + T++IP+GV V ++ V +GP+G + R F + + + E + +DA ++ A + T SH+ NLI GV++G+ KM VYAHFP+ + K + I NFLGEKK R +L G T ++ +E+V+ G + E V ++AA I QK +K D R F DGIY+ +K+ Sbjct: 6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22 Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 L E ++IP V V++N + V+ L R+ ++ + + K+ +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22 Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 L E ++IP V V++N + V+ L R+ ++ + + K+ +++ F + +A + T SH+ N+I GV++G+ YK+ YAHFP+ + N I+ NFLGEK R +++GVTV KV +E+++ G + E V ++AA I Q VK +D R F DGIY+ EK+ Sbjct: 6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21 Identity = 65/183 (35.52%), Postives = 101/183 (55.19%), Query Frame = 3 Query: 93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 +E + IP+ V V IN + V+G G++ R+F H + + DEE + + F ++K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NFLGE+ RK ++ D V V VK +++ + G + E V ++ A I Q +K +D R F DGIY+ +K Sbjct: 8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEE----NVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21 Identity = 63/182 (34.62%), Postives = 108/182 (59.34%), Query Frame = 3 Query: 96 ETMDIPDGVKVK-INAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 E ++IP+ V ++ IN + + V+ +L R + ++ ++ E+ K+ +++ + +K +A I T SH+ N+ITGV++G+ YKM+ YAHFP+ S+ N I+ NFLGEK RK +++GV V S +++++ G D E ++AA I Q V+ +D R F DGIY+ EK+ Sbjct: 9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDV---VIKKED---NKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 3.256e-21 Identity = 67/187 (35.83%), Postives = 103/187 (55.08%), Query Frame = 3 Query: 87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 ++ ++IP+ V +++ + VEGP G ++R + ++ + DE+A + I+ KTSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NFLGEK R+ T IR D ++ E+V L G E V ++AA I Q V +KD R F DG+Y+++K Sbjct: 1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVT--VSVDEDADADAVVIETDETDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176 The following BLAST results are available for this feature:
BLAST of CK934995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934995 ID=CK934995; Name=CK934995; organism=Citrus sinensis; type=EST; length=853bpback to top |