CK934995

Overview
NameCK934995
Unique NameCK934995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length853
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METMP (50S ribosomal protein L6P OS=Methanococcus maripaludis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.009e-24
Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            L  E ++IP+ V V+IN   + V+    +L R+  +  ++       E GK  + I+  F  +  +A + T  SH+ N+ITGVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +++V+ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPENVNVEINGSTVVVKSGAKELKRELMYPGIEI----STEDGK--VVIECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EDVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METHJ (50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.009e-24
Identity = 65/180 (36.11%), Postives = 99/180 (55.00%), Query Frame = 3
Query:  102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            + IP GV V ++  V+ V+GP+G L RD  +  ++  +      G   ++       +  ++ + T  SH  N+ TGVTKGY Y M+ VY+HFPI   +    + +EI NFLGEK  R   +L G TV    KV  DE+ + G D E+V  +AA I +   ++++D R F DGIY+  +S
Sbjct:    7 VSIPSGVSVTMDGTVLHVKGPKGNLQRDMWYPGIEITI------GSEDVRFTTESQKKAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKV--VGETLEIVNFLGEKYPRSARILPGTTV----KVGSDEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METM6 (50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.561e-23
Identity = 69/184 (37.50%), Postives = 101/184 (54.89%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            L  E ++IP  V V+IN   + V+    +L RD  +  ++       E GK  + I+  F  +  +A + T  SH+ N+I GVT G+ YK+   YAHFP+  S   N   + I NFLGEK  R   ++DGVTV  S    +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPANVNVEINGNTVAVKSGAKELKRDLLYPGIEI----STEDGK--VVIECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMKVSAKGN--TVMIDNFLGEKYTRTAKIMDGVTVKVSG---EEVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.039e-23
Identity = 64/180 (35.56%), Postives = 101/180 (56.11%), Query Frame = 3
Query:   96 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            E ++IP+GV+V IN   + V+GP G+ SR F + N+D   +T+ E     + ++  F  +K  A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   +  N   + I NFLGE+  R   ++    V+      DE+ + G + E V ++ A + Q   +K +D R F DGIY+  K
Sbjct:    9 EEIEIPEGVEVIINNNEVTVKGPNGEDSRKFTYPNVD---ITEVE---NNVVLETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METMA (50S ribosomal protein L6P OS=Methanosarcina mazei GN=rpl6p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.255e-22
Identity = 65/182 (35.71%), Postives = 102/182 (56.04%), Query Frame = 3
Query:   93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            + T++IP+GV V ++  V   +GP+G + R F +  +   +   E      + +DA    ++  A + T  SH+ NLI GV++G+  KM  VYAHFP+   +    K + I NFLGEKK R   +L G T ++     +E+V+ G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:    6 ARTIEIPEGVSVSLSQDVFTAKGPKGTVERTFWYPGIKIEVREGE------VVVDAESSRKEQKAMVGTFASHLKNLIIGVSEGFECKMNIVYAHFPMQVKV--EGKTLVIGNFLGEKKPRIAKIL-GETKVKVS--GNEIVVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METVS (50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            L  E ++IP  V V++N   + V+     L R+     ++  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METVA (50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.568e-22
Identity = 62/185 (33.51%), Postives = 102/185 (55.14%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            L  E ++IP  V V++N   + V+     L R+     ++  +  +      K+ +++ F  +  +A + T  SH+ N+I GV++G+ YK+   YAHFP+  +   N   I+  NFLGEK  R   +++GVTV    KV  +E+++ G + E V ++AA I Q   VK +D R F DGIY+ EK+
Sbjct:    6 LIREEIEIPGNVSVEVNGSEVVVKSGAKVLKRELAFPGIEIKMENE------KVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMKVTFKGNTVIID--NFLGEKYPRTAKVMEGVTV----KVNGEEVIVSGTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEKA 178          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.461e-21
Identity = 65/183 (35.52%), Postives = 101/183 (55.19%), Query Frame = 3
Query:   93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            +E + IP+ V V IN   + V+G  G++ R+F H  +   +  DEE     + +   F ++K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NFLGE+  RK  ++ D V V     VK +++ + G + E V ++ A I Q   +K +D R F DGIY+ +K
Sbjct:    8 TEIIPIPEDVTVTINGSEVTVKGNGGEIKRNFNHNKIT--ISNDEE----NVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_META3 (50S ribosomal protein L6P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.493e-21
Identity = 63/182 (34.62%), Postives = 108/182 (59.34%), Query Frame = 3
Query:   96 ETMDIPDGVKVK-INAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638
            E ++IP+ V ++ IN + + V+    +L R   + ++   ++  E+    K+ +++ +  +K +A I T  SH+ N+ITGV++G+ YKM+  YAHFP+  S+  N   I+  NFLGEK  RK  +++GV V  S    +++++ G D E   ++AA I Q   V+ +D R F DGIY+ EK+
Sbjct:    9 EEIEIPESVTIEVINNEEVVVKAGGKELRRILSYPDV---VIKKED---NKVVVESLYPRKKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSG---EDVIVTGIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179          
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.256e-21
Identity = 67/187 (35.83%), Postives = 103/187 (55.08%), Query Frame = 3
Query:   87 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635
            ++   ++IP+ V  +++   + VEGP G ++R   + ++   +  DE+A    + I+      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NFLGEK  R+       T IR D   ++  E+V L G   E V ++AA I Q   V +KD R F DG+Y+++K
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVT--VSVDEDADADAVVIETDETDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
The following BLAST results are available for this feature:
BLAST of CK934995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METMP7.009e-2437.5050S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METHJ7.009e-2436.1150S ribosomal protein L6P OS=Methanospirillum hung... [more]
RL6_METM61.561e-2337.5050S ribosomal protein L6P OS=Methanococcus maripal... [more]
RL6_METS32.039e-2335.5650S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METMA2.255e-2235.7150S ribosomal protein L6P OS=Methanosarcina mazei ... [more]
RL6_METVS8.568e-2233.5150S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METVA8.568e-2233.5150S ribosomal protein L6P OS=Methanococcus vanniel... [more]
RL6_METST1.461e-2135.5250S ribosomal protein L6P OS=Methanosphaera stadtm... [more]
RL6_META32.493e-2134.6250S ribosomal protein L6P OS=Methanococcus aeolicu... [more]
RL6_HALWD3.256e-2135.8350S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004224_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934995 ID=CK934995; Name=CK934995; organism=Citrus sinensis; type=EST; length=853bp
GGGGAGGGTTTTGCGGCATCTCTAGCTTAAGCGTAGGAGGAGAAGAANNN
NGAAGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGAC
TATGGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTG
AAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAAC
CTCGACTTCCATCTCATGACTGACGAGGAAGCCGGTAAGCGCAAGCTTAA
GATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTG
CCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGC
TACAAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGG
TAACAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGG
TTCGAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAG
GTTAAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCG
CTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACATTA
GGAAATTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGA
GAAGAATGATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATGAA
TTTTTTTTTAAATCTTTTTAATTTTGCCTCTTACTTTGAGTTGAGGACAT
GCTTTTGGTTGTATTTGGGATTTGGGACTTGGGAGTTCTAGATTTCAATT
TTATGTCTTCAATTGCTATCATCACAATATATGTATGGATTTTATAGCTA
TGC
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