CK934995
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METBU (50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl6p PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.554e-21 Identity = 61/178 (34.27%), Postives = 95/178 (53.37%), Query Frame = 3 Query: 102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 + IP+GV V V+ GP+G +R + ++ E ++ +D+ +K A + T SH+ N++ GV G+ Y M+ VY+HFP+ + N K I NFLGEKK R ++L +V S DE+++ G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 9 ISIPEGVTVTFEKNVLSASGPKGTNTRFLWYPGVNI------EVNGSEIIVDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQIKV--NGKKFVINNFLGEKKPRVSNILGETSVKASG---DEVIVSGINKEDVGQTAANIEQKTKIKRFDPRVFQDGIYIVDK 175
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.237e-20 Identity = 64/185 (34.59%), Postives = 101/185 (54.59%), Query Frame = 3 Query: 93 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 638 + T++IP+GV V + V GP+G + R + + M D + G+ + +DA + ++ A + T SH+ NL+ GV +G+ KM VYAHFP+ + + K + I NFLGEKK R +I KVK +++ + G + E V ++AA I QK +K D R F DGIY+ +K+ Sbjct: 6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 1.237e-20 Identity = 59/178 (33.15%), Postives = 99/178 (55.62%), Query Frame = 3 Query: 102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 ++IPD V +++ + VEGP G ++R + ++D + +++A ++D KT + + T SHV N+ GV++G+ YK+ Y+HFP+ + + + I+NFLGEK R+ + V+ D +E+ L G IE V ++AA I Q V +KD R F DG+Y+ EK Sbjct: 6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVD--VSVEDDAVVVASEVD----DAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.368e-19 Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 3 Query: 102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 632 ++IPD V ++ + VEGP G ++R + ++ D E G ++ D + KT + + T SHV N+ GVT+G+ Y M Y+HFP+ S+ + I I NFLGEK RK + G T + D +EL + G IE V ++AA I Q V +KD R F DG+Y++E Sbjct: 5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.333e-19 Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 3 Query: 108 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEKS 638 IP+ VKV +++V GP+G++ R F +H + K+ ++ +F +R+ I T SH+ N++ GV + Y+++ Y HFP+ + N +E NFLGEK ++++ LD V V I +K + E+V++ D E A++I Q K KD R+F DGI++ K+ Sbjct: 12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 2.333e-19 Identity = 60/178 (33.71%), Postives = 98/178 (55.06%), Query Frame = 3 Query: 102 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 ++IP+ V + + I VEG G ++R + ++D + D + I++ + KT + I T SH+ N+ GVT+G+ Y M Y+HFP+ ++ + IE NFLGEK R+ + G T + D +EL + G DIE V ++AA I Q + +KD+R F DG+Y++ K Sbjct: 6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDT------VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.158e-18 Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = 3 Query: 84 ILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 + +++P+ V++ I ++ GP+G+ +R K+ + E G K+++ +K A + T H+ NLITGV +G+ Y ++ VYAHFPI + N IE NF+GEK R+ ++ V S + ++ + G DIE ++AA + Q +K KD R F DGIY+ +K Sbjct: 18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.369e-18 Identity = 55/191 (28.80%), Postives = 106/191 (55.50%), Query Frame = 3 Query: 84 ILSSETMDIPDGVKVKINAKV-----IEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 I+ E + I D V+++I+ + + V+GP+G+++++F + ++ + DE + I A +R+ A + +++ N+ GVT+G+ YK++ VY+HFP + + I NF+GE R +++D VI + ++++ G D E V ++AA + Q ++K++D R F DGIY+ EK Sbjct: 17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYPDVYLWVEDDE------VVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.803e-18 Identity = 59/179 (32.96%), Postives = 96/179 (53.63%), Query Frame = 3 Query: 102 MDIPDGVKVKINAK-VIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 635 ++IP+G+ V + V GP G + R + + ++ E +++DA ++ A + T SH+ NL+ GV +G+ KM +YAHFP+ + + K + I NFLGEKK R +L G T ++ +E+ + G + E V ++AA I QK +K D R F DGIY+ +K Sbjct: 9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVRDGE------VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176
BLAST of CK934995 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.154e-16 Identity = 53/169 (31.36%), Postives = 93/169 (55.03%), Query Frame = 3 Query: 75 MKTILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEEAGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALI 566 M+ + S E ++IP GV V I +++V+GP G+++++FK+ + L K+ ++ + ++ A + T + N+ GVT+G+RYK++ +Y HFP+ + N IE NFLG K +++ GV V K K+++V++G D ELVS AA + Sbjct: 1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDG------KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQGNQLVIE--NFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159 The following BLAST results are available for this feature:
BLAST of CK934995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934995 ID=CK934995; Name=CK934995; organism=Citrus sinensis; type=EST; length=853bpback to top |