CK935028

Overview
NameCK935028
Unique NameCK935028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.687e-28
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 3
Query:  450 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            L  VD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  S L F SL E ++FA+ WVPFCKK++++ RAP  YF                Q+ + MK+EY++    I
Sbjct:  343 LSAVDLFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEFYFSQKVDYLKDKVHPNFVQERRAMKREYEEFKVRI 458          

HSP 2 Score: 33.4982 bits (75), Expect = 8.687e-28
Identity = 15/38 (39.47%), Postives = 19/38 (50.00%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W  + +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  296 WLTSIICEIWFAVSWILDQFPKWYPIDRETYLDRLSLR 333          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.578e-27
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 698
            EL  VD+FV+T D   EPP+IT NTVLS+LAVDYPV ++ACYVSDD  + L F +L E ++FA+ WVPFCKKY ++ RAP  YF
Sbjct:  339 ELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYF 422          

HSP 2 Score: 33.8834 bits (76), Expect = 1.578e-27
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W ++ +CE  F   W+L    KW P+  +TY  RL  R
Sbjct:  293 WLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLR 330          

HSP 3 Score: 20.4014 bits (41), Expect = 1.578e-27
Identity = 11/45 (24.44%), Postives = 21/45 (46.67%), Query Frame = 2
Query:    2 GTSINAETPKIKKTSTCFSSSWPIQSRHVSLYTKKFFIKTHIIGL 136
            G   +A+ P + +     S   PI+S  ++ Y     ++  I+GL
Sbjct:  232 GDGDDADIPMMDEGRQPLSRKVPIKSSKINPYRMLIVLRLVILGL 276          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.915e-27
Identity = 57/132 (43.18%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI----EHAAKRSSLFD 824
            +LP +D+FV+TAD E EPP++T NT+LS+LAVDYPV K++CY+SDD  + L+F ++ EA+ FA LWVPFC+K+N++ R P  YF                +D + +K+EYD+    I    +   +RS  F+
Sbjct:  352 DLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYFSLKIDPTKNKSRIDFVKDRRKIKREYDEFKVRINGLPDSIRRRSDAFN 483          

HSP 2 Score: 26.9498 bits (58), Expect = 1.915e-27
Identity = 12/38 (31.58%), Postives = 20/38 (52.63%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W ++ +CE  F F WIL    K  P+   T  + L+++
Sbjct:  301 WLMSIICELWFGFSWILDQIPKLCPINRSTDLEVLRDK 338          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.915e-27
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 698
            EL PVD+FV+T D   EPP+IT NTVLS+LAVDYPV K+ACYVSDD  + L F +L   ++FA+ WVPFCKK++++ RAP  YF
Sbjct:  357 ELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYF 440          

HSP 2 Score: 33.113 bits (74), Expect = 1.915e-27
Identity = 15/38 (39.47%), Postives = 19/38 (50.00%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W  + +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  311 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLR 348          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.672e-26
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            +LP +DMFV+TAD E EPP++T NT+LS+LA DYPV KLACYVSDD  + L F ++ EA+ FA +WVPFC+K+N++ R P  YF                +D + +K+EYD+    I
Sbjct:  374 DLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYFSLKRDPYKNKVKADFVKDRRRVKREYDEFKVRI 490          

HSP 2 Score: 22.7126 bits (47), Expect = 2.672e-26
Identity = 11/38 (28.95%), Postives = 18/38 (47.37%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W ++ +CE  F   W+L    K  P+   T    L+E+
Sbjct:  323 WGMSVVCELWFALSWLLDQLPKLCPINRATDLNVLKEK 360          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.500e-26
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            ELP VD+FV TAD   EPP++ ++TVLS++A DY   KL  Y+SDDA S L FY L EAS+FAK W+PFCKKY V+ R+P  YF              ++W  MK+ Y  ++  +
Sbjct:  110 ELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYF--AKVASPPDGCGPKEWFTMKELYKDMTDRV 222          

HSP 2 Score: 32.7278 bits (73), Expect = 3.500e-26
Identity = 12/39 (30.77%), Postives = 21/39 (53.85%), Query Frame = 1
Query:  208 FAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQE 324
            +AW      E  F F W+L ++ +W P+  +T+  RL +
Sbjct:   66 WAWLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRLAQ 104          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.557e-26
Identity = 49/83 (59.04%), Postives = 64/83 (77.11%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRY 695
            +LP +D+FV TAD  +EPP++ VNTVLS+ A+DYP  KLA Y+SDD  S L FY+L EA++FAK WVPFCKK+NV+  +P  Y
Sbjct:  107 DLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAY 189          

HSP 2 Score: 31.187 bits (69), Expect = 4.557e-26
Identity = 11/38 (28.95%), Postives = 19/38 (50.00%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            WF+ F+ E  F   W++  + +W P+    +  RL  R
Sbjct:   66 WFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRR 103          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.702e-25
Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = 3
Query:  444 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHA 800
            Q LP VD+FV TAD + EPP + ++T+LS++A +YP  K++ Y+SDD  S L FY+L EAS FAK W+PFCK+YN++ R+P  YF              ++W  +K  Y+++ + I+ A
Sbjct:  100 QNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYF--SESKVHHNLCIPKEWALIKNLYEEMRERIDTA 216          

HSP 2 Score: 30.4166 bits (67), Expect = 1.702e-25
Identity = 12/39 (30.77%), Postives = 18/39 (46.15%), Query Frame = 1
Query:  211 AWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            AW      E  F   W++  + +W P   +T+  RL ER
Sbjct:   59 AWLGMAAAELWFAVYWVIAQSVRWRPFRRRTFRDRLAER 97          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.068e-24
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI----EHAAKRSSLFDL 827
            +LP +D+FV+TAD E EPP++T NT+LS+LAVDYPV KLACY+SDD  + L F +L + + FA  WVPFC+K+N++ R P  YF                ++ + +K+EYD+    I    E   +RS  +++
Sbjct:  398 DLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYFGQKRNFLKNKVRLDFVRERRRVKREYDEFKVRINSLPEAIRRRSDAYNV 530          

HSP 2 Score: 21.1718 bits (43), Expect = 1.068e-24
Identity = 12/38 (31.58%), Postives = 17/38 (44.74%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W ++  CE  F   W+L    K  P+   T    L+ER
Sbjct:  347 WGMSTTCELWFALSWLLDQLPKLCPVNRLTDLGVLKER 384          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.069e-24
Identity = 56/132 (42.42%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI----EHAAKRSSLFD 824
            +LP +D+FV+TAD E EP + T  T+LS+LAVDYPV KLACYVSDD  + L F ++ EA+ FA +WVPFCKK++++ R P  YF                +D + +K+E+D+    I    +   +RS  F+
Sbjct:  377 DLPGLDVFVSTADPEKEPVLTTATTILSILAVDYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCKKHDIEPRNPDSYFSVKGDPTKGKRRNDFVKDRRRVKREFDEFKVRINGLPDSIRRRSDAFN 508          

HSP 2 Score: 26.1794 bits (56), Expect = 1.069e-24
Identity = 12/38 (31.58%), Postives = 20/38 (52.63%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W ++ +CE  F F W+L +  K  P+   T    L+E+
Sbjct:  326 WGMSIVCELWFAFSWLLDMLPKVNPVNRSTDLAVLKEK 363          
The following BLAST results are available for this feature:
BLAST of CK935028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA9_ORYSI8.687e-2848.28Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA5_ARATH1.578e-2760.71Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CSLD4_ARATH1.915e-2743.18Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CESA9_ARATH1.915e-2760.71Probable cellulose synthase A catalytic subunit 9 ... [more]
CSLD3_ARATH2.672e-2647.86Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLE2_ORYSJ3.500e-2646.96Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE1_ARATH4.557e-2659.04Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLE1_ORYSJ1.702e-2542.86Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLD5_ARATH1.068e-2442.11Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD3_ORYSJ1.069e-2442.42Cellulose synthase-like protein D3 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004222_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935028 ID=CK935028; Name=CK935028; organism=Citrus sinensis; type=EST; length=868bp
GGGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTT
GTTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACG
AAAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATC
TTGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAA
TCATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTT
TCATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAA
ACATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCA
TTAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTAC
TACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGC
TGCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCG
CCAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCC
AGTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCA
ATTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCA
TTCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCC
AGATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGA
AAAACATGAAGAAAGAGTATGATAAACTTAGCCAAAACATAGAACATGCA
GCCAAAAGATCTTCTTTATTTGATCTAACAGGAGGAATGACTGTTTTCTN
NNATACAGAACGCATGAA
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