CK935028

Overview
NameCK935028
Unique NameCK935028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 3
Query:  435 NRIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            N   +LP +D+FV+TAD E EPP++T NT+LS+LA DYPV KL+CYVSDD  + L F ++ EA+ FA +WVPFC+K++++ R P  YF                +D + +K+EYD+    I
Sbjct:  392 NGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYDEFKVRI 512          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 54/121 (44.63%), Postives = 78/121 (64.46%), Query Frame = 3
Query:  435 NRIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            N   +LP +D+FV+TAD E EPP++T NT+LS+LA DYPV KL+CYVSDD  + L F ++ EA+ FA +WVPFC+K++++ R P  YF                +D + +K+EYD+    I
Sbjct:  392 NGRSDLPGLDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANMWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRSDFVKDRRRVKREYDEFKVRI 512          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.988e-24
Identity = 50/117 (42.74%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            +LP  D+FV+TAD E EPP++T NT+LS+LA +YPV KL+CYVSDD  + L F ++ EA+ FA +WVPFC+K+ ++ R P  YF                +D + +K+E+D+    +
Sbjct:  377 DLPGFDVFVSTADPEKEPPLVTANTILSILAAEYPVEKLSCYVSDDGGALLTFEAMAEAASFANIWVPFCRKHAIEPRNPDSYFSLKRDPYKNKVKSDFVKDRRRVKREFDEFKVRV 493          

HSP 2 Score: 24.6386 bits (52), Expect = 3.988e-24
Identity = 12/38 (31.58%), Postives = 19/38 (50.00%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W ++ +CE  F   W+L    K  P+   T  Q L+E+
Sbjct:  326 WGMSVVCELWFALSWLLDQLPKLCPINRATDLQVLKEK 363          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD4_ORYSJ (Cellulose synthase-like protein D4 OS=Oryza sativa subsp. japonica GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            +LP +D+FVT+AD E EPP++T NT+LS+LA DYPV KLACY+SDD  + L+F +L E + FA+ WVPFC+K+ V+ R P  YF                ++ + +K+EYD+    +
Sbjct:  407 DLPGIDVFVTSADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLSFEALAETASFARTWVPFCRKHGVEPRCPEAYFGQKRDFLKNKVRVDFVRERRKVKREYDEFKVRV 523          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSJ (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            +LP +D+FV+TAD E EP ++T NT+LS+LA DYPV KLACYVSDD  + L F ++ EA+ FA LWVPFC+K+ ++ R P  YF                +D + +K+EYD+    +
Sbjct:  347 DLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDPFKNKVKGDFVKDRRRVKREYDEFKVRV 463          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD1_ORYSI (Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica GN=CSLD1 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI 791
            +LP +D+FV+TAD E EP ++T NT+LS+LA DYPV KLACYVSDD  + L F ++ EA+ FA LWVPFC+K+ ++ R P  YF                +D + +K+EYD+    +
Sbjct:  347 DLPGIDIFVSTADPEKEPVLVTANTILSILAADYPVDKLACYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPDSYFNLKRDPFKNKVKGDFVKDRRRVKREYDEFKVRV 463          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 47/84 (55.95%), Postives = 67/84 (79.76%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 698
            +LP +D+FV+TADAE EPP++T NT+LS+L+VDYPV KL+ Y+SDD  S + F ++ EA+ FAK+WVPFC+K+ ++ R P  YF
Sbjct:  202 DLPGIDVFVSTADAEKEPPLVTANTILSILSVDYPVEKLSVYISDDGGSLVTFEAIAEAASFAKIWVPFCRKHKIEPRNPESYF 285          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.231e-23
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  447 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI----EHAAKRSSLFDL 827
            +LP VD+FV+TAD E EPP++T NT+LS+LAVDYP+ KL+ Y+SDD  + L F ++ EA +FA+ WVPFC+K++++ R P  YF                +D + +K+EYD+    I    E   KR+  F++
Sbjct:  263 DLPGVDVFVSTADPEKEPPLVTANTLLSILAVDYPIEKLSAYISDDGGAILTFEAMAEAVRFAEYWVPFCRKHDIEPRNPDSYFSIKKDPTKNKKRQDFVKDRRWIKREYDEFKVRINGLPEQIKKRAEQFNM 395          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.982e-23
Identity = 57/149 (38.26%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  369 FAIVFVILQVXXXXXXXXCVRLNRIQE-----LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHA 800
            FA+ +VI Q             NR+ E     LP VD+FV TAD   EPP + ++T+LS++A +YP  K++ Y+SDD  S L FY+L EAS FAK W+PFC++YN++ R+P  YF              ++W  +K  Y+++ + I+ A
Sbjct:   65 FAVYWVITQSVRWCPVRRRTFKNRLAERYKENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYF--SESEGHHNLCSPKEWSFIKNLYEEMRERIDSA 211          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.597e-22
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  450 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRS 812
            L  VD+FV  ADA  EPP+ T NTVLS+LA DYP   +ACYV DD    L F SL EA+ FA+ W+PFC+++ V+ RAP  YF                +D + MK+EY++    + H A R+
Sbjct:  124 LAGVDVFVAAADAAREPPLATANTVLSVLAADYPAGGVACYVHDDGADMLVFESLFEAAGFARRWIPFCRRHGVEPRAPELYFARGVDYLRDRAAPSFVKDRRAMKREYEEFKVRMNHLAARA 246          

HSP 2 Score: 23.0978 bits (48), Expect = 1.597e-22
Identity = 11/38 (28.95%), Postives = 15/38 (39.47%), Query Frame = 1
Query:  214 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 327
            W  +  CE      W++    K +P    TY  RL  R
Sbjct:   77 WVTSVACELWLAASWLIAQLPKLSPANRVTYLDRLASR 114          
The following BLAST results are available for this feature:
BLAST of CK935028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLD2_ORYSJ1.455e-2444.63Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI1.455e-2444.63Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ARATH3.988e-2442.74Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD4_ORYSJ4.232e-2444.44Cellulose synthase-like protein D4 OS=Oryza sativa... [more]
CSLD1_ORYSJ7.219e-2445.30Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD1_ORYSI7.219e-2445.30Cellulose synthase-like protein D1 OS=Oryza sativa... [more]
CSLD6_ARATH1.231e-2355.95Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD1_ARATH1.231e-2342.11Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLE6_ORYSJ7.982e-2338.26Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CESAB_ORYSJ1.597e-2243.90Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004222_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935028 ID=CK935028; Name=CK935028; organism=Citrus sinensis; type=EST; length=868bp
GGGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTT
GTTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACG
AAAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATC
TTGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAA
TCATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTT
TCATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAA
ACATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCA
TTAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTAC
TACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGC
TGCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCG
CCAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCC
AGTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCA
ATTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCA
TTCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCC
AGATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGA
AAAACATGAAGAAAGAGTATGATAAACTTAGCCAAAACATAGAACATGCA
GCCAAAAGATCTTCTTTATTTGATCTAACAGGAGGAATGACTGTTTTCTN
NNATACAGAACGCATGAA
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