CK935028

Overview
NameCK935028
Unique NameCK935028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.174e-20
Identity = 55/136 (40.44%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  450 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF--XXXXXXXXXXXXXXQDWKNMKKEYDKLSQNI---EHAAK-RSSLFDLTGGM 839
            LP +D+FVTTAD   EP + T N++LS+LA DYPV +  CY+SDD+   L + ++ EA+KFA LWVPFC+K+ ++ R P  YF                 D + ++KEYD     I   EH  K RS  ++   G+
Sbjct:  183 LPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYFELKSHPYMGRAQEEFVNDRRRVRKEYDDFKARINGLEHDIKQRSDSYNAAAGV 318          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSJ (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. japonica GN=CSLF3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.079e-19
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  450 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 698
            LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LWVPFC+K+ ++ R+P  YF
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.079e-19
Identity = 45/83 (54.22%), Postives = 63/83 (75.90%), Query Frame = 3
Query:  450 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 698
            LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LWVPFC+K+ ++ R+P  YF
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.403e-19
Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  558 KLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMKKEYDKLSQNIEHAAKRSSLFDLTGGMTVFXXTER 863
            +LACYVSDD CSP+ +Y+L EA+ FA+ WVPFC+++ V +RAPFRYF               DW  MK EYDKL + IE A + + L    G    F   +R
Sbjct:  173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYFASAPEFGPADRKFLDDWTFMKSEYDKLVRRIEDADETTLLRQGGGEFAEFMDAKR 274          
BLAST of CK935028 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  450 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 698
            LP +D+F+ T D   EP + T+N++LS+LA DYP  + A Y+SDD  S  ++  L+E ++FA LWVPFC+K+ V+ RAP  YF
Sbjct:  151 LPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYF 233          
The following BLAST results are available for this feature:
BLAST of CK935028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF6_ORYSJ2.174e-2040.44Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF3_ORYSJ1.079e-1954.22Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLF3_ORYSI1.079e-1954.22Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CSLH3_ORYSJ2.403e-1945.10Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLF9_ORYSJ4.532e-1848.19Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004222_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10003_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935028 ID=CK935028; Name=CK935028; organism=Citrus sinensis; type=EST; length=868bp
GGGGACATCTATTAATGCCGAAACACCAAAAATAAAAAAAACGAGTACTT
GTTTTTCAAGCTCATGGCCAATACAAAGTCGTCATGTCTCCCTCTATACG
AAAAAGTTTTTCATAAAAACACATATCATAGGGCTTTAGATGTTATCATC
TTGTTCCTTCTTCTATGTCTGCTCTTCTATCGGCTCTCAACGTTGAAGAA
TCATGGATTTGCTTGGTTTCTTGCTTTTCTATGTGAGTCTTGTTTTACTT
TCATCTGGATTCTCATCGTCAACTGCAAGTGGACTCCTTTGACCTACAAA
ACATATCCCCAACGTCTCCAAGAAAGGTAACAAATCAAATAACGTTAGCA
TTAATAATTTCCGCATCATTTGCAATTGTCTTTGTCATTTTGCAAGTTAC
TACACACACACACACACACACATGTGTACGACTCAACAGGATACAGGAGC
TGCCCCCAGTGGACATGTTTGTGACAACTGCTGATGCTGAACTCGAGCCG
CCAATCATCACTGTAAACACAGTGCTGTCTTTGTTGGCAGTTGATTATCC
AGTTCACAAGCTCGCTTGCTATGTTTCTGATGATGCCTGCTCACCTCTCA
ATTTCTACTCTCTTGTTGAAGCTTCTAAATTCGCTAAGCTTTGGGTTCCA
TTCTGTAAAAAGTATAATGTTCAAATTAGAGCTCCCTTTAGATACTTCCC
AGATAGTGAGCCGTCCGATTCCAGTTCAGGGGAACTCCTGCAAGACTGGA
AAAACATGAAGAAAGAGTATGATAAACTTAGCCAAAACATAGAACATGCA
GCCAAAAGATCTTCTTTATTTGATCTAACAGGAGGAATGACTGTTTTCTN
NNATACAGAACGCATGAA
back to top