CK935181

Overview
NameCK935181
Unique NameCK935181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935181_ssr26 microsatellite CK935181_ssr26:26..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1771 contig Csv1_Contig1771:1..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935181 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 313.923 bits (803), Expect = 1.029e-118
Identity = 150/176 (85.23%), Postives = 160/176 (90.91%), Query Frame = 2
Query:  158 LRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 685
            LRSP+  MASTLR  + E  N+KKPF PPREVHVQVTHSMPP+K EIF S+  WA+NNILVHLKPVEKCWQ  DFLPDPAS+GF++QVKELRER KE+PDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLT WAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT
Sbjct:   23 LRSPRVFMASTLRPPSVEDGNVKKPFSPPREVHVQVTHSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPASEGFEDQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 198          

HSP 2 Score: 135.191 bits (339), Expect = 1.029e-118
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1
Query:  688 QYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYT 891
            QYLIGSGMDPRTEN+PYLGFIYTSFQERATFISHGNTAR AKEHGDMKLAQ+CG IA+DEKRHETAYT
Sbjct:  200 QYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARHAKEHGDMKLAQVCGIIAADEKRHETAYT 267          
BLAST of CK935181 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 2.506e-117
Identity = 156/203 (76.85%), Postives = 170/203 (83.74%), Query Frame = 2
Query:   83 MALKLSPFT-TQNQKFPSFALPQMGSLRSPKFSMAS-TLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 685
            MALKL       +    S  LP+   LRS +  MAS T+   +KE+ N KKP MPPRE HVQ THSMPPQKIEIFKS+E WAE N+LVHLKPVEKCWQPQDFLPDPAS+GF +QVKELRER KE+PD+Y VVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYL+GRVDM+QIEKT
Sbjct:    1 MALKLHHTAFNPSMAVTSSGLPRSYHLRSHRVFMASSTIGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPASEGFMDQVKELRERTKEIPDEYLVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKT 203          

HSP 2 Score: 131.724 bits (330), Expect = 2.506e-117
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 1
Query:  688 QYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYT 891
            QYLIGSGMDPR+EN+PYLGFIYTSFQERATFISHGNTARLAK+HGD +LAQ+CG IA+DEKRHETAYT
Sbjct:  205 QYLIGSGMDPRSENNPYLGFIYTSFQERATFISHGNTARLAKDHGDFQLAQVCGIIAADEKRHETAYT 272          
BLAST of CK935181 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 2.309e-115
Identity = 148/201 (73.63%), Postives = 169/201 (84.08%), Query Frame = 2
Query:   83 MALKLSPFTTQNQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 685
            MAL ++  + ++ K   F      S RS +  MAST+   + EV ++KK F PPREVHVQVTHSMPP+KIE+F S+ DWA  N+LVHLKPVEKCWQP DFLPDPAS+GFDEQVKELRER KE+PDDYFVVL+GDMITEEALPTYQTM+NTLDGVRDETGA++T WAIWTRAWTAEENRHGDLLNKYLYLSGRVDM+QIEKT
Sbjct:    1 MALNINGVSLKSHKMLPFPC---SSARSERVFMASTIHRPSVEVGSVKKAFTPPREVHVQVTHSMPPEKIEVFDSLRDWAAQNLLVHLKPVEKCWQPTDFLPDPASEGFDEQVKELRERCKEIPDDYFVVLIGDMITEEALPTYQTMINTLDGVRDETGATVTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKT 198          

HSP 2 Score: 128.642 bits (322), Expect = 2.309e-115
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1
Query:  688 QYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYT 891
            QYLIGSGMDPRTEN+PYLGF+YTS ++  TF+SHGNTARLAKEHGDMKLAQICG+IA+DEKRHETAYT
Sbjct:  200 QYLIGSGMDPRTENNPYLGFVYTSLRKGVTFVSHGNTARLAKEHGDMKLAQICGSIAADEKRHETAYT 267          
BLAST of CK935181 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 7.338e-114
Identity = 147/203 (72.41%), Postives = 164/203 (80.79%), Query Frame = 2
Query:   83 MALKLSPFTTQNQKFPSFALPQM--GSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 685
            MALKL         FP   +P      +RS +  MAST+ S + EV  +KKPF PPREVHVQVTHS+ P+K EIF S+ +WA+ NILV LK V+KCWQP DFLPD AS+GFDEQV ELR+R KE+PDDYF+VLVGDMITEEALPTYQTMLNTLDGVRDETGASLT WAIWTRAWTAEENRHGDLLNKYLYLSGRVDM+QIEKT
Sbjct:    1 MALKLC--------FPPHKMPSFPDARIRSHRVFMASTIHSPSMEVGKVKKPFTPPREVHVQVTHSLAPEKREIFNSLNNWAQENILVLLKDVDKCWQPSDFLPDSASEGFDEQVMELRKRCKEIPDDYFIVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKT 195          

HSP 2 Score: 137.117 bits (344), Expect = 7.338e-114
Identity = 64/68 (94.12%), Postives = 67/68 (98.53%), Query Frame = 1
Query:  688 QYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYT 891
            QYLIGSGMDPRTEN+PYLGFIYTSFQERATFISHGNTARLAKEHGD+KLAQICG IA+DEKRHETAYT
Sbjct:  197 QYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDLKLAQICGIIAADEKRHETAYT 264          
BLAST of CK935181 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.068e-106
Identity = 130/175 (74.29%), Postives = 149/175 (85.14%), Query Frame = 2
Query:  161 RSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 685
            RS   S    + S    V+  KKP+ PPREVH+QV HS+PPQK EIF S++ WA+ N+L  LKPVEK WQPQDFLPDP+SDGF ++VKELRERAKE+PDDYFV LVGDM+TEEALPTYQTMLNTLDGVRDETGAS T+WA+WTRAWTAEENRHGDLLNKY+YL+GRVDM+QIEKT
Sbjct:   21 RSNGMSKMVAMASTINRVKTAKKPYTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSSDGFYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKT 195          

HSP 2 Score: 130.954 bits (328), Expect = 1.068e-106
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1
Query:  688 QYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYT 891
            QYLIGSGMDP TEN+PYLGF+YTSFQERATFISHGNTAR AKE+GD+KLAQICGTIA+DEKRHETAYT
Sbjct:  197 QYLIGSGMDPGTENNPYLGFLYTSFQERATFISHGNTARHAKEYGDLKLAQICGTIAADEKRHETAYT 264          
BLAST of CK935181 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.007e-102
Identity = 141/205 (68.78%), Postives = 155/205 (75.61%), Query Frame = 2
Query:   83 MALKLSPFTTQNQKFPSFALPQMGSLRSPK-FSMASTLRSNT--KEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILV-HLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 685
            MALKL+P TT    FPS       S RSP+ F MA++  S+T  KE E  +  +   R  +       P    EIFKS+      ++L+ HLKPVEKCWQPQDFLP+P SDGF+EQVKELR RAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLT WAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT
Sbjct:    1 MALKLNPVTT----FPSTRSLNNFSSRSPRTFLMAASTFSSTSTKEAEAKEVTWTTKRGAYASDPFHAPTGSWEIFKSLGRLGLRDVLISHLKPVEKCWQPQDFLPEPESDGFEEQVKELRARAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 201          

HSP 2 Score: 135.961 bits (341), Expect = 2.007e-102
Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 1
Query:  688 QYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYT 891
            QYLIGSGMDP+TEN+PYLGFIYTSFQERATFISHGNTARLAK+HGDMKLAQICG IA+DEKRHETAYT
Sbjct:  203 QYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKDHGDMKLAQICGIIAADEKRHETAYT 270          
BLAST of CK935181 vs. ExPASy Swiss-Prot
Match: STAD_CORSA (Omega-12 acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Coriandrum sativum PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.875e-91
Identity = 124/205 (60.49%), Postives = 147/205 (71.71%), Query Frame = 2
Query:   83 MALKLSPFTT----QNQKFPSFALPQMGSLRSPKFSMASTLRSNTKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSMEDWAENNILVHLKPVEKCWQPQDFLPDPASDGFDEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT 685
            MA+KL+   T    +   F   A PQ G +RS K SMASTL ++    + LK               +  P+  E+F S+E WA +NILVHLK VE  WQPQD+LPDP SD F++QVKE+RERAK++PD+YFVVLVGDMITEEALPTY +MLN  DG++D+TGA  TSWA WTRAWTAEENRHGDLLNKYLYLSGRVDMR IEKT
Sbjct:    1 MAMKLNALMTLQCPKRNMFTRIAPPQAGRVRS-KVSMASTLHASPLVFDKLK---------------AGRPEVDELFNSLEGWARDNILVHLKSVENSWQPQDYLPDPTSDAFEDQVKEMRERAKDIPDEYFVVLVGDMITEEALPTYMSMLNRCDGIKDDTGAQPTSWATWTRAWTAEENRHGDLLNKYLYLSGRVDMRMIEKT 189          

HSP 2 Score: 117.857 bits (294), Expect = 1.875e-91
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 1
Query:  688 QYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDMKLAQICGTIASDEKRHETAYT 891
            QYLIGSGMD +TEN PY+GFIYTSFQERATFISH NTA+LA+ +GD  LAQ+CG IASDEKRH TAYT
Sbjct:  191 QYLIGSGMDTKTENCPYMGFIYTSFQERATFISHANTAKLAQHYGDKNLAQVCGNIASDEKRHATAYT 258          
The following BLAST results are available for this feature:
BLAST of CK935181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_SOLCO1.029e-11885.23Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SIMCH2.506e-11776.85Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU2.309e-11573.63Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_OLEEU7.338e-11472.41Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ORYSJ1.068e-10674.29Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_LINUS2.007e-10268.78Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CORSA1.875e-9160.49Omega-12 acyl-[acyl-carrier-protein] desaturase, c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_H01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935181 ID=CK935181; Name=CK935181; organism=Citrus sinensis; type=EST; length=891bp
GGGGTGGAGGAAAACTGAAGCTGAAAGAGAGAGAGAGAGAGAAAAGAAAA
AGAGGAGAAAAAAAAATCGAAGAAACAGATAAATGGCTCTCAAGCTCAGC
CCTTTCACCACTCAAAACCAGAAATTTCCTTCCTTTGCTCTTCCTCAAAT
GGGCAGCCTCAGATCTCCAAAGTTCTCCATGGCTTCAACTCTTCGTTCTA
ACACCAAGGAGGTTGAGAACCTCAAGAAGCCTTTTATGCCCCCTCGGGAG
GTGCATGTTCAAGTCACCCACTCCATGCCACCTCAAAAGATTGAGATCTT
CAAATCCATGGAGGATTGGGCTGAGAACAACATTTTGGTTCACCTGAAGC
CAGTTGAGAAGTGTTGGCAACCACAGGATTTTCTGCCGGATCCTGCCTCT
GATGGATTCGATGAACAAGTCAAGGAACTAAGGGAGAGGGCAAAAGAGCT
TCCAGATGATTACTTTGTTGTTTTGGTTGGAGATATGATTACGGAAGAAG
CTCTTCCAACATATCAAACAATGCTTAATACCTTGGACGGGGTTCGTGAT
GAAACAGGTGCTAGCCTCACTTCTTGGGCTATTTGGACAAGAGCATGGAC
TGCTGAAGAGAATAGGCATGGAGACCTTCTGAATAAGTATCTCTACCTGA
GTGGACGGGTAGACATGAGACAAATTGAGAAGACTTTCAGTATTTAATTG
GATCCGGAATGGATCCCCGTACAGAAAACAGTCCCTACCTTGGTTTCATC
TACACTTCATTCCAAGAAAGGGCAACTTTTATTTCTCATGGAAACACAGC
TCGCCTTGCCAAGGAGCATGGTGACATGAAGTTGGCTCAAATATGTGGTA
CGATTGCTTCAGATGAGAAGCGCCACGAGACTGCCTACACC
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