CK935189

Overview
NameCK935189
Unique NameCK935189
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935189 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.280e-27
Identity = 75/238 (31.51%), Postives = 113/238 (47.48%), Query Frame = 1
Query:  106 GGSAQNCGSGVVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECG 792
            G + + CG G   G   +G G  G       +  +++   F  +   +N A   C  + FYT  AF+ A + +PGF + G++   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG
Sbjct:   38 GTTDEYCGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI---KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG 238          
BLAST of CK935189 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.672e-27
Identity = 79/233 (33.91%), Postives = 108/233 (46.35%), Query Frame = 1
Query:  106 GGSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 789
            GG     G G   G    G G  G  +  +++   F  +   +N A   C  + FYT  +F+ AA ++ GF         KREIAAFFA   HET                CYI +++ AS D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC
Sbjct:   64 GGGGGGGGGG---GGGGGGGGGSGVSVESVVTEAFFNGI---KNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALEC 256          
BLAST of CK935189 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.725e-27
Identity = 73/225 (32.44%), Postives = 108/225 (48.00%), Query Frame = 1
Query:  127 GSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDAR--CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASS--DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 789
            G G   G    G G+ G  +  +++   F  +   +N A   C  + FYT  AF+ A  A+PGF + G E   KREIAAFFA   HET               +CYI +++ +++  D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI---KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALEC 248          
BLAST of CK935189 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.414e-26
Identity = 74/230 (32.17%), Postives = 104/230 (45.22%), Query Frame = 1
Query:  109 GSAQNCGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 789
            G     G     G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++ GF N       KREIAAFFA   HET                CYI +++ A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALEC 253          
BLAST of CK935189 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.553e-25
Identity = 87/273 (31.87%), Postives = 123/273 (45.05%), Query Frame = 1
Query:   61 IGSILIFSLV-LSFVLGG---SAQNCG--SGVVC--------GERDTGHGTDGGEL------------GKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVSPASSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 789
            +G+ L+  LV ++ V+G    SAQNCG   G+ C        GE   G G   G                I++ +    ++  + D+ C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +CYI ++  AS D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC
Sbjct:    1 MGNKLVLVLVAVALVMGPKNVSAQNCGCAEGLCCSQYGYCGTGEDYCGTGCQQGPCTTASPPPSNNVNADILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALEC 238          
BLAST of CK935189 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.194e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1
Query:  652 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 789
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of CK935189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE1.280e-2731.51Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ1.672e-2733.91Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE3.725e-2732.44Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ2.414e-2632.17Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU4.553e-2531.87Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY2.194e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_F12 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935189 ID=CK935189; Name=CK935189; organism=Citrus sinensis; type=EST; length=813bp
GGGACACACANNNAGTAAAGGATAATTGATATCATAACTCTTGCTTTCAA
AATGAGGCTCATTGGGTCCATACTAATTTTCTCTCTAGTTTTATCTTTTG
TACTAGGAGGTTCAGCACAGAATTGTGGAAGCGGCGTTGTGTGCGGTGAA
CGTGATACTGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTC
AAGGGAGATGTTTGAAGACTTGCTTCCGTATAGAAATGATGCCCGATGCC
CTGCCAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCT
TTTCCAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAAT
TGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGACCG
ATGCACCTGGTGGAGAATATGCTTGGGGATATTGCTATATTAGGCAAGTT
AGCCCTGCGTCGTCCGACTACTGTTATCCTTACTGTCCATGTCCCTTGCC
AGGGCAATACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATT
ACTTAAGGTGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGAC
CTACTTGCCACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTG
GATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACG
AATGGAAACCATCAGCAAATGACGTAAACGCGGGCCGGCTTCCGGGATAC
GGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCTACGTTGG
GAATGACGCTGTA
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