CK935242

Overview
NameCK935242
Unique NameCK935242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.845e-14
Identity = 36/60 (60.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  106 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            E+RYRGVR+RPWGRYAAEIRDP KK RVWLG+F+T                G+KA TNFP
Sbjct:   50 EVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.574e-13
Identity = 36/64 (56.25%), Postives = 40/64 (62.50%), Query Frame = 1
Query:  112 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNEIL 303
            RYRGVR+RPWGRYAAEIRDP  K R WLGTFDT                GAKA+TNF  P  ++
Sbjct:   56 RYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNFTYPTAVI 119          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 36/61 (59.02%), Postives = 38/61 (62.30%), Query Frame = 1
Query:  109 IRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 291
            IRYRGVR+RPWGRYAAEIRDP  K R WLGTFDT                G KA+TNF  P
Sbjct:   56 IRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYP 116          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.716e-12
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  112 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            +YRGVR+RPWG++AAEIRDP K TRVWLGTF+T                G+KAK NFP
Sbjct:   60 KYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 35/64 (54.69%), Postives = 39/64 (60.94%), Query Frame = 1
Query:  112 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTPNEIL 303
            RYRGVR+RPWG++AAEIRDP +  RVWLGTFDT                G KAK NFP    IL
Sbjct:   76 RYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRIL 139          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.279e-12
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1
Query:  112 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            RY+G+R+RPWGR+AAEIRDP K  RVWLGTF+T                GAKAK NFP
Sbjct:   24 RYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFP 81          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.081e-11
Identity = 33/57 (57.89%), Postives = 36/57 (63.16%), Query Frame = 1
Query:  115 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            YRGVR+RPWG++AAEIRDP K  RVWLGTFDT                G KAK NFP
Sbjct:   70 YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  112 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFPTP 291
            +YRGVR+RPWG++AAEIRDP  +TR+WLGTF T                G KA TNF TP
Sbjct:  104 KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTP 163          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  115 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G+KAK NFP
Sbjct:   92 YRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
BLAST of CK935242 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1
Query:  115 YRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTXXXXXXXXXXXXXXXXGAKAKTNFP 285
            YRGVR+RPWG++AAEIRDP K  RVWLGTF+T                G+KAK NFP
Sbjct:   90 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
The following BLAST results are available for this feature:
BLAST of CK935242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERF77_ARATH8.845e-1460.00Ethylene-responsive transcription factor 10 OS=Ara... [more]
ESR1_ARATH2.574e-1356.25Ethylene-responsive transcription factor ESR1 OS=A... [more]
ESR2_ARATH1.668e-1259.02Ethylene-responsive transcription factor ESR2 OS=A... [more]
RAP26_ARATH3.716e-1256.90Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF110_ARATH4.853e-1254.69Ethylene-responsive transcription factor ERF110 OS... [more]
ERF73_ARATH8.279e-1256.90Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH1.081e-1157.89Ethylene-responsive transcription factor ERF112 OS... [more]
CRF6_ARATH1.844e-1153.33Ethylene-responsive transcription factor CRF6 OS=A... [more]
EF115_ARATH2.409e-1156.14Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH2.409e-1156.14Ethylene-responsive transcription factor ERF114 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004564_C06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935242 ID=CK935242; Name=CK935242; organism=Citrus sinensis; type=EST; length=864bp
GGGGCTTCAAGAGCTCACTAACAACTTGCTCCTCTGTTCAAAATGNNNNC
GAGAGATAAGCTCAACAAACCATCCTCTAACCCGAATCCGAATTCGAAGG
ATATGGAGATCCGATACAGAGGAGTGAGGAAGCGGCCGTGGGGGCGTTAC
GCCGCCGAGATCCGGGACCCGGGGAAGAAAACCCGCGTCTGGCTCGGCAC
CTTCGACACCGCCGAGGAAGCAGCACGTGCCTACGACGCAGCAGCGCGTG
AGTTCCGCGGCGCCAAAGCCAAGACAAACTTCCCAACGCCAAACGAAATC
CTTGGCACCCTCGCCCGCAGCCCCAGCCAGAGCAGCACCGTGGAGTCATC
CTCTCCTCCTCCGCCGACGCTGCTGCCACAGCCACAGCCGCTGCCACAGC
TAAACCTAGCTCTCAACAGCTACCGTAATGCCGGCGCGTGCCTCCCAGTC
GCCACGGCGCGTCCGGTCCTTTTCTTCGACGTTTTCTCCTCCGGTGGTAC
TGTTGCGACTCACCGTGATGCACGCTGTGTTGGTTTTTATCCCGGCGGGA
CCCAGAGCGACTCCGATTCGTCATCGGTCGTCGTTGATTACGATCCTCGT
TCGTCTGAGAGAAGATTGATTGATCTTGATCTTGATCTTAATCTCCCTCC
TCCACCTGAAGTGGCTTGAGTTTTTGGACTGAAGCTAATGCTGACGTGTA
CGGCGATGGTGATGTGTATATAGTGACCCTAGCAAGATCCTTTGGTCGAT
CTTCGTATTTTTGTTTTTGCAACTGGAAAATCTAGGACGGTTACTCCACG
TTGTTTTTAACTGCTGCCGTTAGAAATATATATATATATGTGTTTAATGC
TTAGTCAAATGATA
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