CK935259

Overview
NameCK935259
Unique NameCK935259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CLOB1 (5'-nucleotidase surE OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=surE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.565e-25
Identity = 75/212 (35.38%), Postives = 121/212 (57.08%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKML 756
            I++TNDDGI+A G+ +L  +L  +  + V + AP++++SA SHSIT   PI  +       + AY++SGTPADC  + + + L P   D+VISGIN G N G  ++YSGTV+ A E   + VPS+++S  ++  K+   +Y +AA+  L ++N     ++ +       LN+++P       KG K+ K G  IF   +     E +G K+L
Sbjct:    3 ILLTNDDGIEAEGINTLAELL--SKYHDVIMVAPENQRSASSHSITIYEPIIVKQVKKPYNIEAYSISGTPADCVRVALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAMYKVPSMAVSAQFI--KNKKENYKIAAKYALRMLN----RLKKEDLKNDVVLNLNIPFCSEEEIKGIKVCKVGNKIFNTRFSEEIDE-EGNKVL 204          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYNS3 (5'-nucleotidase surE OS=Synechococcus sp. (strain CC9311) GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.044e-25
Identity = 70/180 (38.89%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 648
            I+++NDDG+ A G+R+L     +       VC PD E+SA  H +T + PI A  AD  F+ G+ A+A SGTPADC  L + + L P  PDLV+SGIN G N G  V  SGTVA A E    G+P++++S   + W        ++  AA   + +  A LA+     +PE   LN+++P
Sbjct:    6 ILISNDDGVFADGIRTLAAAAAAAGHQVTVVC-PDQERSATGHGLTLQTPIRAERADELFEPGIKAWACSGTPADCMKLALFE-LLPEKPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGLPAMAVSSACFQW-------REFQAAAHLAIQVAEAALAD----QWPENLLLNLNVP 172          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYNPW (5'-nucleotidase surE OS=Synechococcus sp. (strain WH7803) GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.044e-25
Identity = 74/188 (39.36%), Postives = 102/188 (54.26%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKG 672
            I+++NDDG+ A G+R+L     +       VC PD E+SA  H +T + PI A  AD  FD G++A+A SGTPADC  L + + L    PDLV+SGIN G N G  V  SGTVA A E    G+PS++IS   + W        D+  AA   + +  A L +     +PE   LN+++P   P   G
Sbjct:    6 ILISNDDGVFADGIRALAGAAAAAGHQVTVVC-PDRERSATGHGLTLQTPIRAEKADSLFDAGISAWACSGTPADCMKLALFE-LMDEAPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGLPSMAISSACFQW-------RDFQGAAALAVEVATAALRD----QWPENLLLNLNIPPCRPEVMG 180          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PROMA (5'-nucleotidase surE OS=Prochlorococcus marinus GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.044e-25
Identity = 75/208 (36.06%), Postives = 111/208 (53.37%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF---DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPII-NAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT 729
            I+++NDDG+ A G+R+L  +  ++  + V V  PD E+SA  H +T + PI A  AD    +G+ A+  SGTPADC  L +++ L    PDL++SGIN G N G  +  SGTVA A E    G+PS+++   S+ W         + LA E  L I  NAI     NQ +P++  LN+++P       G           K GW R++
Sbjct:    6 ILISNDDGVFAEGIRTLA-IAAASRGHEVTVVCPDQERSATGHGLTLQAPIRAERADELFNEGIQAWGCSGTPADCVKLALNE-LLKEKPDLILSGINHGPNLGTDIFCSGTVAAALEGTLEGIPSLAVSIASFQW-------RKFKLAGELALNIAENAI-----NQKWPKKLLLNLNIPPCDSEQMG-----------KPGWTRLS 188          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_PARL1 (5'-nucleotidase surE OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.044e-25
Identity = 75/191 (39.27%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW-VGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 693
            I+VTNDDGI APGL+ L ++    +R  V V AP+ E+S  +HS++  +P+  R         YAV GTP+DC  + V   L    PDLV+SGIN G N    V YSGT+A A E    G+PS+++S  +   G +NV   T  AE   P    IL ++    +PE   +NI+ P  +P +  G ++T+QG
Sbjct:   11 ILVTNDDGIHAPGLKVLEKIAHKLSR-DVWVVAPEDEQSGSAHSLSLANPLRVRKLT---ARKYAVRGTPSDCVLMAVRHILKDEQPDLVVSGINRGQNIADDVTYSGTIAAAMEGTQLGIPSIALSQAFGFSGSANVKWST--AEHFAP---DILKKLIAAGWPEEVLININFPDVVPGSVTGIEVTRQG 192          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_CLOBM (5'-nucleotidase surE OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.044e-25
Identity = 72/195 (36.92%), Postives = 114/195 (58.46%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIF 705
            I++TNDDGI+A G+ +L  +L  +  + V + AP++++SA SHSIT   PI  +       V AY++SGTPADC  + + + L P   D+VISGIN G N G  ++YSGTV+ A E   + VPS+++S  ++  K+   +Y +AA+  L ++N     ++ +       LN+++P       KG K+ K G  IF
Sbjct:    3 ILLTNDDGIEAEGINTLAELL--SKYHNVTMVAPENQRSASSHSITIYEPIIVKQVKKPYNVEAYSISGTPADCVRVALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAMYKVPSMAVSAQFI--KNKKENYKIAAKYALGMLN----RLKKEDLKNDVVLNLNIPFCSEEEIKGIKVCKVGNKIF 188          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_SYNPX (5'-nucleotidase surE OS=Synechococcus sp. (strain WH8102) GN=surE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 71/180 (39.44%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 648
            ++++NDDG+ A G+R+L    V+       VC PD E+SA  H +T + PI A  AD     GVTA+A SGTPADC  L + + L    PDLV+SGIN G N G  V  SGTVA A E    G+PS++IS   + W         +   AE  + +    LA+     +PE   LN+++P
Sbjct:    3 VLISNDDGVFAEGIRTLAAAAVARGHDVTVVC-PDQERSATGHGLTLQTPIRAERADELFVPGVTAWACSGTPADCMKLALFE-LVKDKPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGIPSMAISSACFQW-------RQFQAGAELAVEVAEQALAD----QWPENLLLNLNIP 169          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_RHOPB (5'-nucleotidase surE OS=Rhodopseudomonas palustris (strain BisB18) GN=surE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 79/207 (38.16%), Postives = 108/207 (52.17%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKMGWRRVTSEMQG 744
            I+ TNDDGI APGL+ +V  +       V V AP+ ++S VSHS++   P+  R     G   +AV GTP DC  +G    L    PDLV+SG+N G N    VVYSGT+AGA E    G PS ++S ++    S  N  T   E  L    AIL +I +Q  P+   +NI+ P   P +  G ++T+QG      G+ RV     G
Sbjct:    3 ILCTNDDGIHAPGLK-IVEQIARQLSDDVWVVAPELDQSGVSHSLSLNDPLRLREI---GPRHFAVRGTPTDCVIMGARHILGDKGPDLVLSGVNKGRNVAEDVVYSGTIAGALEGSILGFPSFALSQEF----SMDNKGTPLWETALAHGPAILRKIIDQGVPKNTVININFPACAPGDVVGVRVTRQGKR--NQGFLRVDERRDG 199          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_KOSOT (5'-nucleotidase surE OS=Kosmotoga olearia (strain TBF 19.5.1) GN=surE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 80/191 (41.88%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTA-YAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS-YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQ 690
            I+VTNDDGI APG+  L + L    +++V V APD E+SA  H+IT R P+ A+       T  YA++GTPADC  LG+  A+     +LV+SGIN G N G  ++YSGTV+GA E      PS++IS  DW     N   Y  AAE  L  ++           PE   LNI++P+ D    KG+K+T+Q
Sbjct:    3 ILVTNDDGIMAPGINILAQKLAE--KHSVLVVAPDVERSATGHAITIRTPLWAKEVKVGEKTVGYAINGTPADCVKLGIL-AIADFEIELVVSGINKGPNLGTDILYSGTVSGALEGAVMEKPSIAISAADW-----NNPKYETAAEFLLEFLDTYDV----TKMPEFTALNINVPSVDRAELKGWKVTRQ 181          
BLAST of CK935259 vs. ExPASy Swiss-Prot
Match: SURE_GEOBB (5'-nucleotidase surE OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=surE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 68/178 (38.20%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  127 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP 660
            I++TNDDG+ +PGL +L++ +       V V APD E+SAVSH++T  HP+ A      G   ++V GTP DC +LG+  +L    PDLVISG+N G+N    V YSGTVA A EA   G+P++++S        +  ++  AA AC      +   +  +  P   +LN+++P D+P
Sbjct:    3 ILLTNDDGVHSPGLAALIKKVSEVAE--VVVVAPDREQSAVSHALTLHHPLRAARI---GANVFSVEGTPTDCVNLGI-HSLLSYRPDLVISGVNRGANIADDVTYSGTVAAALEATLMGIPAIAVSL----VTRSAGEHFEAAAACAA---KLAVTVHQKGLPRDTYLNVNVP-DLP 166          
The following BLAST results are available for this feature:
BLAST of CK935259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_CLOB11.565e-2535.385'-nucleotidase surE OS=Clostridium botulinum (str... [more]
SURE_SYNS32.044e-2538.895'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_SYNPW2.044e-2539.365'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_PROMA2.044e-2536.065'-nucleotidase surE OS=Prochlorococcus marinus GN... [more]
SURE_PARL12.044e-2539.275'-nucleotidase surE OS=Parvibaculum lavamentivora... [more]
SURE_CLOBM2.044e-2536.925'-nucleotidase surE OS=Clostridium botulinum (str... [more]
SURE_SYNPX2.669e-2539.445'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_RHOPB2.669e-2538.165'-nucleotidase surE OS=Rhodopseudomonas palustris... [more]
SURE_KOSOT2.669e-2541.885'-nucleotidase surE OS=Kosmotoga olearia (strain ... [more]
SURE_GEOBB2.669e-2538.205'-nucleotidase surE OS=Geobacter bemidjiensis (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_H04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935259 ID=CK935259; Name=CK935259; organism=Citrus sinensis; type=EST; length=815bp
GGGAAACGCACGACTAAGGACTAACAATTCTTCTTCTTCTTCTTCTTGGA
CCGAACAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTA
TTGTTAACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGG
ATCGACGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAA
TCGCTACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTA
GTCATAGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTT
GATGGAGTTACAGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATC
GTTGGGTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCA
GTGGCATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGG
ACAGTTGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTC
TATATCATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACAC
TCGCTGCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATC
AGGAATCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTAC
AGATATTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCA
TATTCAAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAG
ATGTTATCAACAATGACAATGGACACAGATTCAGCAGTTACAATTGAAAC
AGATACATCTACCCC
back to top