CK935309

Overview
NameCK935309
Unique NameCK935309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL1_CERAE (Protein yippee-like 1 OS=Cercopithecus aethiops GN=YPEL1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.177e-20
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG FI+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL3_MOUSE (Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL3_HUMAN (Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL3_CERAE (Protein yippee-like 3 OS=Cercopithecus aethiops GN=YPEL3 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL3_BOVIN (Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 41/95 (43.16%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H DLISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A I+C NC   LGW Y +A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCAHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIHCENCKTTLGWKYEQAFESSQKYKEGKYIIELNHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL2_PONAB (Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL2_MOUSE (Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL2_HUMAN (Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL2_CERAE (Protein yippee-like 2 OS=Cercopithecus aethiops GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115
[Close]
BLAST of CK935309 vs. ExPASy Swiss-Prot
Match: YPEL2_BOVIN (Protein yippee-like 2 OS=Bos taurus GN=YPEL2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:  154 FSCRNCLNPLAFHHDLISKTFKAQTGQAYMFSNAMNVVLGRKEDKQMITGIYTIAKIYCSNCGQELGWHYLRAYDLKQKWKEGNFILEKFKMLKE 438
            +SC +C   LA H +LISK+F+   G+AY+F++ +NV  G  E++ ++TG++ +A IYC NC   LGW Y  A++  QK+KEG +I+E   M+K+
Sbjct:   21 YSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKYIIELAHMIKD 115
The following BLAST results are available for this feature:
BLAST of CK935309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
YPEL1_CERAE7.177e-2044.21Protein yippee-like 1 OS=Cercopithecus aethiops GN... [more]
YPEL3_MOUSE1.224e-1943.16Protein yippee-like 3 OS=Mus musculus GN=Ypel3 PE=... [more]
YPEL3_HUMAN1.224e-1943.16Protein yippee-like 3 OS=Homo sapiens GN=YPEL3 PE=... [more]
YPEL3_CERAE1.224e-1943.16Protein yippee-like 3 OS=Cercopithecus aethiops GN... [more]
YPEL3_BOVIN1.224e-1943.16Protein yippee-like 3 OS=Bos taurus GN=YPEL3 PE=3 ... [more]
YPEL2_PONAB1.599e-1943.16Protein yippee-like 2 OS=Pongo abelii GN=YPEL2 PE=... [more]
YPEL2_MOUSE1.599e-1943.16Protein yippee-like 2 OS=Mus musculus GN=Ypel2 PE=... [more]
YPEL2_HUMAN1.599e-1943.16Protein yippee-like 2 OS=Homo sapiens GN=YPEL2 PE=... [more]
YPEL2_CERAE1.599e-1943.16Protein yippee-like 2 OS=Cercopithecus aethiops GN... [more]
YPEL2_BOVIN1.599e-1943.16Protein yippee-like 2 OS=Bos taurus GN=YPEL2 PE=3 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004563_C02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IIF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935309 ID=CK935309; Name=CK935309; organism=Citrus sinensis; type=EST; length=680bp
GGGGATTTGTTAATTGCCTTAAATAATTGAGTCCTCATCATAATTTTCNC
NNNAAATAATGCCCTCTTCTCCTCTCATCTGTTGTTGGTTCCAGTCTTAA
GCAGATCAGTTTTTGGTTTCAGTTAAATGGCAGAGTTCGATGGTCGTCCC
TTCTTCAGTTGCAGAAATTGTCTTAATCCACTTGCCTTTCACCATGATCT
TATTTCCAAAACTTTTAAGGCACAAACAGGACAGGCCTACATGTTTAGTA
ATGCAATGAATGTAGTTCTGGGAAGAAAGGAGGATAAGCAAATGATAACA
GGCATTTACACAATTGCCAAAATCTATTGCAGCAATTGTGGGCAGGAATT
GGGTTGGCATTATTTGCGAGCTTATGATCTCAAACAAAAATGGAAGGAAG
GCAATTTCATTCTCGAGAAATTCAAGATGCTTAAAGAATACAAGTAGCCC
TCTATTTTATTGCAACAAAATAATGCCATCAAAGCAAGTTTTCAAGTTCT
ATGCAAGTATGTATGTGTGTGTGTGCATCTTGGACTTGGAAGAAAATTTG
TGTACTCCATGCACTTCTTTCATTAGATGTATGCATATAATAAGAGTTTA
TTGAAAGAGAGTGTATACATGAAGGGGTAATCAAATTTTTCTCGTATCTT
AAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top