CK935484

Overview
NameCK935484
Unique NameCK935484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10102 contig Csv1_Contig10102:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.317e-23
Identity = 68/222 (30.63%), Postives = 113/222 (50.90%), Query Frame = 2
Query:  296 LQLIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLC---NNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKDVRG---MLSLYEATHLGVHEEDILDEALAFTTSHLESIATH-------QIRSPLVEQVKHALVQPIHRGLQRLEARQYIP------------IYQEESPHNEALLTFAKLDFNKLQKLHQKELGDISRWWKELDFA 886
            L  +D ++RLG+ +HF+ E+ + L  ++    +  +     N   ++   ++  R+LR +GY +S+DV K F+D +G F   L +  RG   ML++   +H+    E I++EA   T  +L +            ++  +  +V++AL  P HR + RLEAR YI             +Y   +  NE  L  AKLDFN++Q  H++EL DI RWW    F+
Sbjct:  338 LWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMEEAKLCTERYLRNALEDGGASDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIENYGPNDVWLGKTMYMMPNISNEKYLELAKLDFNRVQFFHRQELQDIRRWWNSSGFS 559          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: TPSD2_PICAB (Isopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-ISO PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.247e-23
Identity = 70/217 (32.26%), Postives = 110/217 (50.69%), Query Frame = 2
Query:  296 LQLIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLC---NNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKDVRG---MLSLYEATHLGVHEEDILDEALAFTTSHLESIATH-------QIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIYQEES----------PH--NEALLTFAKLDFNKLQKLHQKELGDISRWWK 871
            L  +D ++RLG+ +HF+ E+ + L  ++    +  +     N   ++   ++  R+LR +GY +S+DV K F+D +G F   L +  RG   ML++   +H+    E I+ EA   T  +L +            ++  +  +V++AL  P HR + RLEAR YI  Y              P+  N   L  AKLDFN +Q LHQKEL D+ RWWK
Sbjct:  355 LWAVDTVERLGIDHHFKEEIKDALDYVYSHWDERGIGWARENPIPDIDDTAMGLRILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVAFPGETIMQEAKLCTERYLRNALEDVGAFDKWALKKNIRGEVEYALKYPWHRSMPRLEARSYIEHYGPNDVWLGKTMYMMPYISNLKYLELAKLDFNHVQSLHQKELRDLRRWWK 571          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.006e-23
Identity = 67/217 (30.88%), Postives = 111/217 (51.15%), Query Frame = 2
Query:  296 LQLIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLCNNEND---ELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAK---DVRGMLSLYEATHLGVHEEDILDEALAFTTSHLESIATHQI--RSPLVEQVKHALVQPIHRGLQRLEARQYIPIYQEE------------SPHNEALLTFAKLDFNKLQKLHQKELGDISRWWKELDFA 886
            L L+D I+ LG+  HF+ E+   L  +++   +  +    +    +L   +L  R LR +GY +S+DV   FKD +G F +S  +   ++R ++ L+ A+ L   +E  +D+A  F   +L      +I   + L +++++ +  P H  + R EAR YI  Y ++            S  N   L  AKLDFN +Q LHQ+EL  ++RWWKE   A
Sbjct:  356 LSLVDNIEHLGIGRHFKQEIKVALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRTHGYDVSSDVLNNFKDENGRFFSSAGQTHVELRSVVILFRASDLAFPDEGAMDDARKFAEPYLRDALATKISTNTKLFKEIEYVVEYPWHMSIPRSEARSYIDSYDDDYVWERKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA 572          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 72/224 (32.14%), Postives = 115/224 (51.34%), Query Frame = 2
Query:  296 LQLIDAIQRLGVSYHFESEVDEILGKMHKASQDSDL------CNNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKDVRGM---LSLYEATHLGVHEEDILDEALAFTTSHLESIATHQ-------IRSPLVEQVKHALVQPIHRGLQRLEARQYIP------------IYQEESPHNEALLTFAKLDFNKLQKLHQKELGDISRWWKELDF 883
            L  +D ++RLG+  +F+ E+ E L  +++   D++       CN   D +   ++  R+LR +GY +S+DV + F+D  G+F     +   G+   L+LY  + +    E I++EA  FTT+HL++            ++  L  +V++A+  P HR + RLEAR YI             +Y+     NE  L  AKLDFN +Q LHQKE   I  WW+E  F
Sbjct:  359 LWAVDTVERLGIDRYFKKEIKESLDYVYRY-WDAERGVGWARCNPIPD-VDDTAMGLRILRLHGYNVSSDVLENFRDEKGDFFCFAGQTQIGVTDNLNLYRCSQVCFPGEKIMEEAKTFTTNHLQNALAKNNAFDKWAVKKDLPGEVEYAIKYPWHRSMPRLEARSYIEQFGSNDVWLGKTVYKMLYVSNEKYLELAKLDFNMVQALHQKETQHIVSWWRESGF 580          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: KSA_ARATH (Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.119e-21
Identity = 71/217 (32.72%), Postives = 109/217 (50.23%), Query Frame = 2
Query:  302 LIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLC---NNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKD---VRGMLSLYEATHLGVHEEDILDEALAFTTSHL-------ESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIYQEESP-------------HNEALLTFAKLDFNKLQKLHQKELGDISRWWKE 874
            ++D +QRLG+S +FE E+ E L  +H+   D+ +C    +   ++   ++ FRLLRQ+GY++SADVFK F + +G F   + +    V GM +LY A+ L    E+IL  A  F+ ++L       E I    I   L  ++  AL  P +  L R+E R YI  Y  E+              +N   L  AK D+N  Q  HQ E     +W++E
Sbjct:  334 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNF-EKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE 549          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: CPS1_ORYSJ (Ent-copalyl diphosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CPS1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.270e-18
Identity = 65/217 (29.95%), Postives = 106/217 (48.85%), Query Frame = 2
Query:  302 LIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLC---NNENDELYYISLHFRLLRQNGYKISADVFKKFKDTDGNFKTSLAKD---VRGMLSLYEATHLGVHEEDILDEALAFTTSHLESIATHQ-------IRSPLVEQVKHALVQPIHRGLQRLEARQYI-------------PIYQEESPHNEALLTFAKLDFNKLQKLHQKELGDISRWWKE 874
            ++D ++RLG+S +F+ E+++ +  +++   +  +C   N+   E+   ++ FRLLR +GY +S  VFK F + DG F   + +    V GM +L  A+ +    EDIL  A  F+   L              I   L  +V++ L  P +  L R+EAR YI              +Y+    +N   L  AK DFN+ Q LHQ EL  + +W+ E
Sbjct:  375 VVDRLERLGISRYFQREIEQNMDYVNRHWTEDGICWARNSNVKEVDDTAMAFRLLRLHGYNVSPSVFKNF-EKDGEFFCFVGQSTQAVTGMYNLNRASQISFPGEDILQRARNFSYEFLREREAQGTLHDKWIISKDLPGEVQYTLDFPWYASLPRVEARTYIGQYGGNDDVWIGKTLYRMPIVNNATYLELAKQDFNRCQALHQHELQGLQKWFIE 590          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: KSA_PEA (Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.011e-15
Identity = 67/217 (30.88%), Postives = 101/217 (46.54%), Query Frame = 2
Query:  302 LIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLCNNENDELYYI---SLHFRLLRQNGYKISADVFKKFKDTDGN---FKTSLAKDVRGMLSLYEATHLGVHEEDILDEALAFTTSHL-------ESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIYQEESP-------------HNEALLTFAKLDFNKLQKLHQKELGDISRWWKE 874
            ++D ++RLG+S  F  E+ + +  + K   +  +C   N  +  I   ++ FRLLR +G+++SA VFK F + +G    F     + V GM +L+ A+ +    E IL+ A  F+   L       E I    I   L E+V +AL  P +  L R+E R YI  Y  ES              +N   L  AKLD+N  Q  H  E   I  W+ E
Sbjct:  330 VVDRLERLGISRFFRHEIKDCMNYVSKIWSEKGICWARNSNVQDIDDTAMAFRLLRLHGHQVSAHVFKHF-ERNGEFFCFAGQCTQAVTGMYNLFRASQVLFPGEKILEHAKHFSAKVLKEKREANELIDKWIIMKNLPEEVGYALDMPWYANLDRIETRFYIDQYGAESDVWIGKTLYRMAYVNNNNYLELAKLDYNNCQAQHLIEWNVIQTWYLE 545          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: KSL2_ORYSJ (Ent-kaurene synthase-like 2 OS=Oryza sativa subsp. japonica GN=KSL2 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.842e-15
Identity = 57/215 (26.51%), Postives = 106/215 (49.30%), Query Frame = 2
Query:  296 LQLIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLCNNENDELYYISLH-----FRLLRQNGYKISADVFKKFKDTDGNFKTSL---AKDVRGMLSLYEATHLGVHEEDILDEALAFTTSHL---ESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIYQEESPH-----------NEALLTFAKLDFNKLQKLHQKELGDISRWWKE 874
            L ++D ++++G+S HF  E+  IL   +        C  + DE   + +      FR+LR NGY +S+D    F +   +F  SL     D R +L L++A+ + + E++++ + +   T  L   + +++   R+PL E+V++AL  P +  L RL+ ++ I  +   S             NE ++     DF+  Q + Q+EL  ++ W KE
Sbjct:  214 LYMVDVLEKMGISRHFVGEIKSILDMTYS-------CWKQRDEEIVLDMQTCGMAFRMLRMNGYDVSSDELSHFSE-PSSFHNSLQGYLNDTRSLLELHKASKVSIAEKEVILDNIGSWTGCLLKEQLLSSAMKRNPLSEEVEYALEFPFYTILDRLDHKRNIEHFDITSSQMLETAYLPCHSNEEIMALGVRDFSSSQFIFQEELQQLNSWVKE 420          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: KSB_CUCMA (Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.247e-14
Identity = 56/215 (26.05%), Postives = 111/215 (51.63%), Query Frame = 2
Query:  296 LQLIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLCNNENDELYYI-----SLHFRLLRQNGYKISADVFKKF-KDTDGNFKTSLAKDVRGMLSLYEATHLGVH-EEDILDEALAFTTSHL------ESIATHQIRSPLVEQVKHALVQPIHRGLQRLEARQYIPIYQ------EESPH------NEALLTFAKLDFNKLQKLHQKELGDISRW 865
            L ++D++Q+ G++ HF+ E+  +L + ++       C  + +E  ++     ++ FR+LR  GY +S+D   +F +D   N      KD    L LY+A+ +  H +E +L+   ++T+  L      +S+ + +  S + ++  +AL  P +  L+RL +++ +  Y        +SP+      ++  L  A  DFN LQ++H KEL ++ RW
Sbjct:  279 LHMVDSLQKFGIARHFKEEIRSVLDETYR-------CWMQGEENIFLDASTCAMAFRMLRVEGYDVSSDQLTQFSEDIFPNCLGGYLKDFGASLELYKASQIITHPDESVLENINSWTSRFLKHGLSSDSVWSDRTDSVVKQEAVNALEFPYNATLERLISKRAMESYSGDIVRISKSPYACLNFGHQDFLELAVEDFNTLQRIHLKELEELQRW 486          
BLAST of CK935484 vs. ExPASy Swiss-Prot
Match: KSL4_ORYSJ (Syn-pimara-7,15-diene synthase OS=Oryza sativa subsp. japonica GN=KSL4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.245e-14
Identity = 66/220 (30.00%), Postives = 107/220 (48.64%), Query Frame = 2
Query:  296 LQLIDAIQRLGVSYHFESEVDEILGKMHKASQDSDLCNNENDELYYISLHFRLLRQNGYKISADVFKKFKD--TDGNFKTSLAKDVRGMLSLYEATHLGVHE-EDILDEALAFTTSHL-ESIATHQIR-SPLVEQVKHALVQPIHRGLQRL---------EARQYIPIYQEESP--HNEALLTFAKLDFNKLQKLHQKELGDISRWWKE-----LDFAHK 892
            L ++D +  +G+S HF S++  IL K +      D       +L   ++ FRLLR NGY +S+D      +  T  N       D + +L LY+A+ + + E E IL++   ++ S L E + +  IR +P++ +V++AL  P +  L+ L         +AR Y  I  +  P   NE LL  A  DF+  Q  +Q E+  +  W KE     L+F  K
Sbjct:  338 LSMVDTLVNIGISRHFSSDIKRILDKTYILWSQRD--EEVMLDLPTCAMAFRLLRMNGYGVSSDDLSHVAEASTFHNSVEGYLDDTKSLLELYKASKVSLSENEPILEKMGCWSGSLLKEKLCSDDIRGTPILREVEYALKFPFYATLEPLDHKWNIENFDARAYQKIKTKNMPCHVNEDLLALAAEDFSFCQSTYQNEIQHLESWEKENKLDQLEFTRK 555          
The following BLAST results are available for this feature:
BLAST of CK935484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
TPSD1_PINTA1.317e-2330.63Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TPSD2_PICAB2.247e-2332.26Isopimaradiene synthase, chloroplastic OS=Picea ab... [more]
TASY_TAXCH5.006e-2330.88Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TPSD1_GINBI8.538e-2332.14Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
KSA_ARATH6.119e-2132.72Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
CPS1_ORYSJ8.270e-1829.95Ent-copalyl diphosphate synthase 1, chloroplastic ... [more]
KSA_PEA1.011e-1530.88Ent-copalyl diphosphate synthase, chloroplastic OS... [more]
KSL2_ORYSJ3.842e-1526.51Ent-kaurene synthase-like 2 OS=Oryza sativa subsp.... [more]
KSB_CUCMA4.247e-1426.05Ent-kaur-16-ene synthase, chloroplastic OS=Cucurbi... [more]
KSL4_ORYSJ7.245e-1430.00Syn-pimara-7,15-diene synthase OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_B06 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935484 ID=CK935484; Name=CK935484; organism=Citrus sinensis; type=EST; length=901bp
GGGGAAACATTACTAGCTTTAGCAACCTTTTCTTCTCNNNNCTCAAAAGC
CTTCAGAAAGCAATAGAAACAAAATGTCTTTGGAAGTTTCAGCCTCTCCT
GCTAAAGTTATCCAAAATGCTGGGAAAGATTCTACTCGTCGCTCTGCAAA
TTATCATCCAAGCATCTGGGGGGATCATTTCCTTCAATATACTTGTGACA
CCCAGGAAACTGATGATGGCAGCAATGTAAAGCATCTAGAGCTGAAGAAA
GAAATTAGAAGAATGCTAAAAGCTGATAACAAGCCTTCACGTACACTTCA
ATTGATTGATGCAATTCAGCGTTTAGGAGTGTCTTACCATTTTGAAAGTG
AGGTTGATGAAATATTGGGAAAGATGCATAAGGCTTCCCAAGACTCTGAT
CTTTGTAATAATGAAAATGATGAGCTCTATTATATCTCTCTTCATTTTCG
ATTACTTAGACAAAATGGCTATAAAATTTCCGCTGATGTGTTCAAAAAGT
TCAAAGACACGGATGGGAACTTTAAAACATCTCTTGCGAAAGATGTTCGA
GGAATGTTAAGCTTGTATGAAGCTACGCATCTCGGGGTACATGAAGAAGA
TATACTAGATGAAGCGCTTGCTTTCACCACTAGTCACCTAGAGTCAATAG
CGACTCATCAAATCAGGTCTCCACTTGTTGAACAAGTCAAACATGCCTTA
GTTCAGCCTATCCACAGGGGCTTACAAAGGCTTGAGGCAAGACAGTACAT
TCCTATCTATCAAGAAGAATCTCCCCACAATGAAGCTCTGTTAACTTTTG
CAAAGTTAGATTTTAACAAATTGCAAAAGCTTCACCAGAAGGAACTCGGT
GATATTTCAAGGTGGTGGAAAGAATTAGACTTTGCACATAAGCTACCTTT
C
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