CK935488

Overview
NameCK935488
Unique NameCK935488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK935488_ssr10 microsatellite CK935488_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1978 contig Csv1_Contig1978:554..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1_HUMAN (Eukaryotic translation initiation factor 1 OS=Homo sapiens GN=EIF1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1_BOVIN (Eukaryotic translation initiation factor 1 OS=Bos taurus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FLV+  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1B_MOUSE (Eukaryotic translation initiation factor 1b OS=Mus musculus GN=Eif1b PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1B_MACFA (Eukaryotic translation initiation factor 1b OS=Macaca fascicularis GN=EIF1B PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1B_HUMAN (Eukaryotic translation initiation factor 1b OS=Homo sapiens GN=EIF1B PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.238e-25
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  IV ++++K+HGF
Sbjct:    9 SFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: EIF1_MOUSE (Eukaryotic translation initiation factor 1 OS=Mus musculus GN=Eif1 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.229e-25
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 3
Query:  159 SYDPFADIK---DSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD     D L  G + Y+H+R+QQRNG+K LTTVQG+ +D+  +K++K  KK+F CNG V+     G+VIQLQGD RKN+  FL++  +   D++K+HGF
Sbjct:    9 SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF 113          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_ASHGO (Protein translation factor SUI1 OS=Ashbya gossypii GN=SUI1A PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 3
Query:  159 SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD  D  A     Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK L+K+F CNGN+V D  +G++IQLQGD R  V  FL+    + K  IKIHGF
Sbjct:    8 SFDPFADTGDDEA-SSSNYIHIRIQQRNGRKTLTTVQGIPEEYDLKRILKVLRKDFGCNGNMVKDDEMGEIIQLQGDQRAKVCEFLITQLAIPKKNIKIHGF 108          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_YEAST (Eukaryotic translation initiation factor eIF-1 OS=Saccharomyces cerevisiae GN=SUI1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 3
Query:  159 SYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            S+DPFAD  D        Y+H+R+QQRNG+K LTTVQG+ E++  ++ILK LKK+F CNGN+V D  +G++IQLQGD R  V  F++    + K  IKIHGF
Sbjct:    8 SFDPFADTGDD-ETATSNYIHIRIQQRNGRKTLTTVQGVPEEYDLKRILKVLKKDFACNGNIVKDPEMGEIIQLQGDQRAKVCEFMISQLGLQKKNIKIHGF 108          
BLAST of CK935488 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.152e-22
Identity = 55/100 (55.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  165 DPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 464
            DPFAD  D  A      +H+R+QQRNG+K LTTVQGL  +F  ++IL+ LKK+F CNG +V D  LG+VIQLQGD R  VM FL +   + K  IKIHGF
Sbjct:   11 DPFADTGDDDAQ-PLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
The following BLAST results are available for this feature:
BLAST of CK935488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
EIF1_HUMAN3.238e-2550.48Eukaryotic translation initiation factor 1 OS=Homo... [more]
EIF1_BOVIN3.238e-2550.48Eukaryotic translation initiation factor 1 OS=Bos ... [more]
EIF1B_PIG3.238e-2550.48Eukaryotic translation initiation factor 1b OS=Sus... [more]
EIF1B_MOUSE3.238e-2550.48Eukaryotic translation initiation factor 1b OS=Mus... [more]
EIF1B_MACFA3.238e-2550.48Eukaryotic translation initiation factor 1b OS=Mac... [more]
EIF1B_HUMAN3.238e-2550.48Eukaryotic translation initiation factor 1b OS=Hom... [more]
EIF1_MOUSE4.229e-2549.52Eukaryotic translation initiation factor 1 OS=Mus ... [more]
SUI1_ASHGO5.523e-2552.94Protein translation factor SUI1 OS=Ashbya gossypii... [more]
SUI1_YEAST9.421e-2551.96Eukaryotic translation initiation factor eIF-1 OS=... [more]
SUI1_SCHPO1.152e-2255.00Protein translation factor sui1 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_B10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935488 ID=CK935488; Name=CK935488; organism=Citrus sinensis; type=EST; length=673bp
GGGGATAATACAAACAAACAATTAGCTCTCGAAGTCTCTTTACTTCTCAC
ACTTTCATTTCAGTACTTTTGCACAGGAAACTTCTAAGCTGACCTTCGAA
GGTTTTAGGTCTTCTATAAGCAAAGTACATGGTTGACATAGACAGCCAGA
TTCCAACTTCCTATGATCCCTTTGCTGATATAAAGGACTCCCTTGCCCCA
GGTGACAAAGGGTACGTGCATCTCCGCGTACAGCAGAGGAATGGAAAGAA
GTGCTTAACAACTGTTCAAGGACTTAAAGAGGATTTTGGCTACCAGAAGA
TCCTCAAGGACCTCAAAAAGGAGTTCTGTTGTAACGGGAATGTTGTCAAT
GACAAAGTTCTCGGGAAGGTGATTCAGCTTCAAGGTGATCATCGGAAGAA
TGTTATGATCTTTCTCGTTAAGAGTAAGATTGTGGACAAGGATCGTATCA
AGATTCATGGTTTCTAAACAAATGTGGTGATTAATACATATGGTTATGGT
ATAATATATGTGGTCTTATGTGATCTGCAGAGCATATCTGTAGTCTGTTC
TTGTTGAGGTTTTCTGTATTTCTCTGGACTTGGATTTAAGATTTTCTGTT
CTCAAGTTATGGATAATGATAATAAAAGTTATGGATATTTTTATAAAAAA
AAAAAAAAAAAAAAAAAAAAAAA
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