CK935494

Overview
NameCK935494
Unique NameCK935494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_STRR6 (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=glpF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.809e-15
Identity = 64/226 (28.32%), Postives = 101/226 (44.69%), Query Frame = 2
Query:  248 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGPFVG 883
            L  EF+ TL+ + +    V G           G + I   +G  + V V+ +  +S  H+NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP +G
Sbjct:    5 LFGEFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAHLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIG 223          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_SHIFL (Glycerol uptake facilitator protein OS=Shigella flexneri GN=glpF PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.809e-15
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW 856
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.809e-15
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW 856
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.809e-15
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW 856
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.809e-15
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKH----------------EYNSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHW 856
            IAEF+ T L ++  V  V    K + A  G   + + W  G  + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV     +                E   L G  +T  + + N   A   E++ T +L+  + + TD            LAPL IG  + ++  +  P+TG  +NPAR FG  V      AW   W
Sbjct:   12 IAEFLGTGLLIFFGVGCVAA-LKVAGASFGQWEISVIWGLG--VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGW 219          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_THEMA (Probable glycerol uptake facilitator protein OS=Thermotoga maritima GN=glpF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.892e-15
Identity = 67/224 (29.91%), Postives = 97/224 (43.30%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-KAFMKHEYNSLGGGAN-----TVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-------NNDKAWDDHWIFWVGPFVG 883
            +AEF+ T+L + +    V     +       G + I   +G  + + VY    ISG HINPAVT GL    +    +   Y+ +Q LGA  G  LV   ++ H   +    A      T  +    G+ L  EIIGT VL+  V      K +        L PL +GF V+ + L+    TG  INPAR FG  + +         D  W   W+  +GP +G
Sbjct:    5 LAEFLGTMLLIILGDGVVANVVLKKSKGHNSGWIVITTGWGLAVAMSVYLVGRISGAHINPAVTIGLAFIGQFPWSKVPGYIFSQILGAFVGAILVYLTYLPHWKETDDPDAKLAVFCTGPAVRKYGANLLTEIIGTMVLLMGVLGIGANKLA------DGLNPLLVGFLVWSIGLSLGGPTGYAINPARDFGPRLAHAILPIPGKRDSDWSYSWVPIIGPIIG 222          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.161e-14
Identity = 72/246 (29.27%), Postives = 110/246 (44.72%), Query Frame = 2
Query:  161 HHHGKDYVD----PPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNDKAWDDHWIFWVGPFVG 883
            HHH    VD     PP PL+           + + AEF  T   ++  ++T+I  ++     G   LLGIA + G  + VLV     ISG H+NPAV+  + +   +     + Y+ AQ LG+I     VK      Y+ +  G  TV        A   E + TFVL++ + + ATDP      + V  L  + +G  + M  L   P TG  +NPAR+ G A+       +   W++ V   +G
Sbjct:   75 HHHLWHPVDLPKIKPPVPLV-----------KKVGAEFFGTFTLIFTVLSTIIMDEQHK---GVESLLGIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHLPPAHLLPYIAAQILGSITASFAVKGM----YHPVNPGIVTVPK-VGTVEAFFLEFVTTFVLLFIITALATDP------NAVKELIAVAVGATIMMNALVAGPSTGASMNPARTLGPAIATGR---YTQIWVYLVATPLG 292          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_PSEAE (Glycerol uptake facilitator protein OS=Pseudomonas aeruginosa GN=glpF PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.517e-14
Identity = 61/210 (29.05%), Postives = 97/210 (46.19%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKHE--YNSLGGGANTVA----------SGYNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFG 811
            S +   +AEF+ T L ++     V    K + A  G+  + I W  G  + + +Y +AG+SG H+NPAV+  L+L       +   Y+ AQ  GA C   LV       F++ E   N + G  +++A             + G A   E++ T +L+  + + TD            LAPL IG  + ++  A  P+TG  +NPAR FG
Sbjct:    9 SLFGQCLAEFLGTALLIFFGTGCVAA-LKVAGASFGLWEISIIWGVG--VSMAIYLSAGVSGAHLNPAVSIALWLFAGFEGRKLPFYITAQVAGAFCAAALVYTLYSSLFIEFEQAQNIVRGSQDSLALASVFSTYPHPALSVGQAFLVEVVITAILMAVIMALTDDGNGLPRG---PLAPLLIGLLIAVIGSAMGPLTGFAMNPARDFG 212          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: YFF4_YEAST (Uncharacterized membrane protein YFL054C OS=Saccharomyces cerevisiae GN=YFL054C PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 74/238 (31.09%), Postives = 99/238 (41.60%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGAN--TVASG----------YNKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPV---LAPLPIGFAVFMVHLATIPITGTGINPARSFG----AAVIYNNDKA-----WDDHWIFWVGPFVG 883
            R   AEF+ TL+ +   V   +       + G    L  AW FG M+ V  Y   GISGGHINPAVT  + + RK    +   Y+VAQ +GA  G  +   +         GG +  T A+G              +A   E IG  +LV  + +  D      DS+ P    +  L IGF V  + +A    T   INPAR  G    A++I     A     W   W  W GP  G
Sbjct:  348 REPFAEFLGTLVLVIFGVGGNLQATVTKGSGGSYESLSFAWGFGCMLGV--YVAGGISGGHINPAVTISMAIFRKFPWKKVPVYIVAQIIGAYFGGAMAYGYFWSSITEFEGGPHIRTTATGACLFTDPKSYVTWRNAFFDEFIGASILVGCLMALLD------DSNAPPGNGMTALIIGFLVAAIGMALGYQTSFTINPARDLGPRIFASMIGYGPHAFHLTHWWWTWGAWGGPIAG 577          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.379e-14
Identity = 63/226 (27.88%), Postives = 101/226 (44.69%), Query Frame = 2
Query:  248 LIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSA-------LGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYN-------NDKAWDDHWIFWVGPFVG 883
            L  EF+ TL+ + +    V G           G + I   +G  + V V+ +  +S  ++NPAVT G+ L   +     + Y++AQ  GA+ G  LV    K  Y +     N +A+ ++ G A       L +EI+GTFVLV T+F+       A       +    +G  +  + L+    TG  +NPAR  G  ++++        D  W   WI  VGP +G
Sbjct:    5 LFGEFLGTLILILLGNGVVAGVVLPKTKSNSSGWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILAT-FSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAG------IGTFAVGTLIVGIGLSLGGTTGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIG 223          
The following BLAST results are available for this feature:
BLAST of CK935494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
GLPF_STRR66.809e-1528.32Glycerol uptake facilitator protein OS=Streptococc... [more]
GLPF_SHIFL6.809e-1529.22Glycerol uptake facilitator protein OS=Shigella fl... [more]
GLPF_ECOLI6.809e-1529.22Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL66.809e-1529.22Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO576.809e-1529.22Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_THEMA8.892e-1529.91Probable glycerol uptake facilitator protein OS=Th... [more]
NIP32_ORYSJ1.161e-1429.27Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
GLPF_PSEAE1.517e-1429.05Glycerol uptake facilitator protein OS=Pseudomonas... [more]
YFF4_YEAST1.981e-1431.09Uncharacterized membrane protein YFL054C OS=Saccha... [more]
GLPF_STRPN3.379e-1427.88Glycerol uptake facilitator protein OS=Streptococc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935494 ID=CK935494; Name=CK935494; organism=Citrus sinensis; type=EST; length=930bp
GGGGACAGACGCTAGCTTTTCTCGAGACCAGAGAGGCTGTGTGCTTTTCT
TTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACA
AACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCAC
CACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTC
ATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCAC
TGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTTT
TGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGC
ACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCT
GTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGG
CTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATG
AAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGG
CTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGC
TTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGAC
TCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCAT
GGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTA
GGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGAC
CATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGCAGCGGC
ATACCACCAGTACATNCTGAGGGCTGCTGC
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