CK935494

Overview
NameCK935494
Unique NameCK935494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 538
            +F RA+++EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA+ Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVLSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP3_MOUSE (Aquaporin-3 OS=Mus musculus GN=Aqp3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 65/245 (26.53%), Postives = 100/245 (40.82%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV--------KAFMKHEY-----NSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG----------AAVIYNNDKAWDDHWIFWVGPFVG 883
            R  +AE + TL+ +     +V          GG   + +A+ F   + +LV     +SG H+NPAVTF +    +   I+   Y +AQ LGA  G G+V         AF  +E      N   G   T  SG+ +  +    + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG           + ++   + W   W+  V P +G
Sbjct:   23 RQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLGILV--AGQVSGAHLNPAVTFAMCFLAREPWIKLPIYALAQTLGAFLGAGIVFGLYYDAIWAFANNELFVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTAALIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTALAGWGSEVFTTGRHW--WWVPIVSPLLG 253          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP2_ELEMA (Aquaporin-2 (Fragment) OS=Elephas maximus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 538
            +F RA+ +EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAALL 99          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP2_CANFA (Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.570e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 538
            +F RA+ AEF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLGIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: GLPF_STRCO (Probable glycerol uptake facilitator protein OS=Streptomyces coelicolor GN=glpF PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 64/248 (25.81%), Postives = 96/248 (38.71%), Query Frame = 2
Query:  251 IAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV-----KAFMKH--EYNSLGG----------------GANTVASGYNKG-------SALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIY-------NNDKAWDDHWIFWVGPFVG 883
            I E + T L + +          ++      G L IA+ +G  +    Y +  +SG H+NPAVT G+ + +         Y   Q LGA+ G  LV       F  H  +   +GG                GA  V   ++ G         L  EIIGTFVL+  + +      +   + + +L  L  GF V  + L+    TG  INP R  G  +++            W   WI  VGP +G
Sbjct:    8 IGETIGTALLILLGGGVCAAVTLKASKARNAGWLAIAFGWGFAVMTAAYISGPLSGAHLNPAVTVGIAI-KDGDWSNTPTYFAGQLLGAMIGAVLVWVAYYGQFQAHLTDREIVGGPGAQDTTAKSVEAQEKGAGPVLGVFSTGPEIRHTVQNLATEIIGTFVLLLAILT---QGLNDEGNGLGILGALITGFVVVSIGLSLGGPTGYAINPVRDLGPRIVHALLPLPNKGGSDWSYAWIPVVGPLIG 251          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP3_RAT (Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 65/245 (26.53%), Postives = 100/245 (40.82%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV--------KAFMKHEY-----NSLGGGANTVASGY-NKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG----------AAVIYNNDKAWDDHWIFWVGPFVG 883
            R  +AE + TL+ +     +V          GG   + +A+ F   + +LV     +SG H+NPAVTF +    +   I+   Y +AQ LGA  G G+V         AF  +E      N   G   T  SG+ +  +    + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG           + ++   + W   W+  V P +G
Sbjct:   23 RQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLAILV--AGQVSGAHLNPAVTFAMCFLAREPWIKLPIYTLAQTLGAFLGAGIVFGLYYDAIWAFAGNELVVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTAALIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTALAGWGSEVFTTGQNW--WWVPIVSPLLG 253          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP2_DUGDU (Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 538
            +F RA+ +EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  ++
Sbjct:    3 AFSRAVFSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRATFYLAAQLLGAVAGAAIL 99          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP2_DASNO (Aquaporin-2 (Fragment) OS=Dasypus novemcinctus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 538
            +F RA++AEF+ATL+F++  + + +   +   +     +L IA AFG  I  LV     +SG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  ++
Sbjct:    3 AFSRAVLAEFLATLIFVFFGLGSALSWPQALPS-----VLQIALAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAAIL 99          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP2_AMBHO (Aquaporin-2 (Fragment) OS=Amblysomus hottentotus GN=AQP2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.050e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  233 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLV 538
            +F RA+ +EF+ATLLF++  + + +   +   +     +L IA AFG  I  LV     ISG HINPAVT    +   VS +RA  Y+ AQ LGA+ G  L+
Sbjct:    3 AFSRAVFSEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQTLGHISGAHINPAVTVACLVGCHVSFLRATFYVAAQLLGAVAGAALL 99          
BLAST of CK935494 vs. ExPASy Swiss-Prot
Match: AQP3_BOVIN (Aquaporin-3 OS=Bos taurus GN=AQP3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 62/248 (25.00%), Postives = 101/248 (40.73%), Query Frame = 2
Query:  242 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANT--VASGYNKGSALGA---------------EIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPI-------TGTGINPARSFG----------AAVIYNNDKAWDDHWIFWVGPFVG 883
            R  +AE + TL+ +     +V          GG   + +A+ F   + +L+     +SG H+NPAVTF +    +   I+   Y +AQ LGA  G G++       Y+++   AN   + SG N  + + A               + IGT  L+  V +  DP  +          P+P G   F V L  + I       +G  +NPAR FG           + ++   + W   W+  V P +G
Sbjct:   23 RQALAECLGTLILVMFGCGSVAQVVLSRGTHGGFLTINLAFGFAVTLGILI--AGQVSGAHLNPAVTFAMCFLAREPWIKLPVYTLAQTLGAFLGAGIIFGLY---YDAIWAFANNQLIVSGPNGTAGIFATYPSGHLDMVNGFFDQFIGTASLIVCVLAIVDPYNN----------PVPRGLEAFTVGLVVLVIGTSMGFNSGYAVNPARDFGPRLFTAIAGWGSEVFTTGRHW--WWVPIVSPLLG 253          
The following BLAST results are available for this feature:
BLAST of CK935494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
AQP2_PROHA5.395e-1240.20Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
AQP3_MOUSE1.202e-1126.53Aquaporin-3 OS=Mus musculus GN=Aqp3 PE=2 SV=1[more]
AQP2_ELEMA1.570e-1140.20Aquaporin-2 (Fragment) OS=Elephas maximus GN=AQP2 ... [more]
AQP2_CANFA1.570e-1140.20Aquaporin-2 (Fragment) OS=Canis familiaris GN=AQP2... [more]
GLPF_STRCO2.050e-1125.81Probable glycerol uptake facilitator protein OS=St... [more]
AQP3_RAT2.050e-1126.53Aquaporin-3 OS=Rattus norvegicus GN=Aqp3 PE=2 SV=1[more]
AQP2_DUGDU2.050e-1139.22Aquaporin-2 (Fragment) OS=Dugong dugon GN=AQP2 PE=... [more]
AQP2_DASNO2.050e-1138.24Aquaporin-2 (Fragment) OS=Dasypus novemcinctus GN=... [more]
AQP2_AMBHO2.050e-1140.20Aquaporin-2 (Fragment) OS=Amblysomus hottentotus G... [more]
AQP3_BOVIN2.677e-1125.00Aquaporin-3 OS=Bos taurus GN=AQP3 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004555_A10 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935494 ID=CK935494; Name=CK935494; organism=Citrus sinensis; type=EST; length=930bp
GGGGACAGACGCTAGCTTTTCTCGAGACCAGAGAGGCTGTGTGCTTTTCT
TTGATTGTTCCAAAGAGAAATCAAAATCTTGTGAAGAAGAAGAAGAAGAA
GAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGACA
AACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCAC
CACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCTC
ATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCAC
TGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTTT
TGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGC
ACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGCT
GTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTGG
CTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCATG
AAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTGG
CTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTGC
TTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGAC
TCTCACGTGCCCGTTTTGGCTCCACTTCCAATTGGATTTGCTGTGTTCAT
GGTTCACTTGGCCACCATCCCCATCACTGGAACGGGCATCAACCCTGCTA
GGAGCTTTGGTGCTGCTGTTATCTACAACAATGACAAGGCCTGGGATGAC
CATTGGATCTTCTGGGTTGGTCCTTTCGTTGGAGCATTGGCTGCAGCGGC
ATACCACCAGTACATNCTGAGGGCTGCTGC
back to top