CK935502

Overview
NameCK935502
Unique NameCK935502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:136..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.916e-32
Identity = 64/148 (43.24%), Postives = 94/148 (63.51%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 500
            S  A +R+ ++ K +Q+DPP+  SA P+ D++  W A I+GPSD+PF  G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  R+ Y     ET   SW
Sbjct:    2 STPARRRLMRDFKRMQQDPPSGVSASPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 500
            S  A +R+ ++ K +Q DPPA  SA PV D++  W A I+GP+D+PF  G F + +HF   YP KPP V F +++FHPN+ + G +CLDIL+ +WSP   ++ VL SI SLL DPN       E +++YK +R +Y     ET  +SW
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 67/143 (46.85%), Postives = 91/143 (63.64%), Query Frame = 3
Query:   87 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 515
            KRI KE + L  DP    +A P  D++ ++Q TI GP  SP+  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  +    +  AR WT+ YA
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.268e-32
Identity = 64/149 (42.95%), Postives = 93/149 (62.42%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE-----TTARSWT 503
            S  A +R+ ++ K +Q+DPP   SA PVAD++  W A I+GP+++PF  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE     T   SWT
Sbjct:    2 STTARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 63/150 (42.00%), Postives = 94/150 (62.67%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 506
            S  A +R+ ++ K +Q+D P+  SA P+ D++  W A I+GP+D+PF  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  R++Y     ET   SW +
Sbjct:    2 STPAKRRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.574e-32
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = 3
Query:   87 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 482
            +R+ ++ K LQ+DPPA  S  P  D++  W+A I GP ++PF  G F +S+ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.622e-31
Identity = 61/137 (44.53%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 482
            S  A +R+ ++ K LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.622e-31
Identity = 61/137 (44.53%), Postives = 90/137 (65.69%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 482
            S  A +R+ ++ K LQ+DPPA  S  P  +++  W A I GP  +PF  G F ++I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.613e-31
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 482
            S  A +R+ ++ K LQ+DPP   S  P  +++  W A I GP  +PF  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CK935502 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.613e-31
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 482
            S  A +R+ ++ K LQ+DPP   S  P  +++  W A I GP  +PF  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:    2 STPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of CK935502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC2_CANAL1.916e-3243.24Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_NEUCR2.502e-3243.92Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC13_YEAST2.502e-3246.85Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC2_YARLI3.268e-3242.95Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_DEBHA5.574e-3242.00Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC1_CAEEL5.574e-3245.45Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2A_MOUSE1.622e-3144.53Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.622e-3144.53Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2B_RAT3.613e-3143.80Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT3.613e-3143.80Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004555_A01 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IVF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935502 ID=CK935502; Name=CK935502; organism=Citrus sinensis; type=EST; length=741bp
GGGGGACTTTGACTCGCAACGTAAAATAACACCAGACCCAAACTCTCAGG
CCACAAAGTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAACAA
GGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCC
CTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCATCA
GACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCACC
TGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACTAAGGTTTTCC
ACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGGAG
CAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGCTC
ACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGCTC
ACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCTGG
ACTCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTATGCCCCTGAG
AACATTAATGGCTTGTGGTCCTATTAGTAAATAATAGAAATAAGTTTGTT
TCAGATATTAAAAGACGATATTTGGTTTTGTTTACTAAGTTGTTAAAAGG
TTTTATGTGGGGTTACTTTCAAATTTAGCATTGTTCTTCAATACTTAAAT
TATAATTTACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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