CK935514

Overview
NameCK935514
Unique NameCK935514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 303.138 bits (775), Expect = 1.272e-81
Identity = 145/206 (70.39%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_PONAB (60S ribosomal protein L10 OS=Pongo abelii GN=RPL10 PE=2 SV=3)

HSP 1 Score: 301.982 bits (772), Expect = 2.833e-81
Identity = 145/206 (70.39%), Postives = 163/206 (79.13%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K     GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYTPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.833e-81
Identity = 146/206 (70.87%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR IKNKPYPKSRFCRGVPD KIRI+D+G K+  VD FP CVH++S E+E++SSEALEAARI  NKYM K  GKD FHLRVR HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+  RKWGFTK+ R DY R ++E R+  DGV  +L   HGPL
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 6.312e-81
Identity = 138/207 (66.67%), Postives = 169/207 (81.64%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLA 677
            MGRRPARCYR  KNKPY KSR+CRGVPD KIRI+D+G KK   DEFP CVHL+S EKE +SSEA+EA RI+CNKY++K  GKD+FH+RVRVHP+HVLRINKMLSCAGADRLQTGMRGAFGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+V +KWGFT ++R  Y + K++ R++ DG N K++  HG LA
Sbjct:    1 MGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITNHGTLA 207          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.077e-80
Identity = 144/206 (69.90%), Postives = 164/206 (79.61%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    ++ R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLIPDGCGVKYVPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.837e-80
Identity = 142/206 (68.93%), Postives = 162/206 (78.64%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPDPKIRI+D+G K+  VD+FP CVHLVS E E +SSEALEA RI CNKY+ K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI V +KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.837e-80
Identity = 144/206 (69.90%), Postives = 163/206 (79.13%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +  R++PDG   K +   GPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAAKRLIPDGCGVKYIPERGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 3.133e-80
Identity = 144/206 (69.90%), Postives = 163/206 (79.13%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPAR YR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:    1 MGRRPARRYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 296.204 bits (757), Expect = 1.555e-79
Identity = 142/206 (68.93%), Postives = 163/206 (79.13%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+D+G KK  VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+  ++    ++  ++PDG   K +  HGPL
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSHGPL 206          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.829e-78
Identity = 138/200 (69.00%), Postives = 158/200 (79.00%), Query Frame = 3
Query:   75 RCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGRKWGFTKFSRSDYLRFKSENRIVPDGVNAKLLGCHGPL 674
            RCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI + +KWGFTKF+   +    ++ R++PDG   K +   GPL
Sbjct:    2 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLIPDGCGVKYVPGRGPL 201          
The following BLAST results are available for this feature:
BLAST of CK935514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_HUMAN1.272e-8170.3960S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_PONAB2.833e-8170.3960S ribosomal protein L10 OS=Pongo abelii GN=RPL10... [more]
RL10_CAEEL2.833e-8170.8760S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10_DICDI6.312e-8166.6760S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10L_BOVIN1.077e-8069.9060S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10_BOMMA1.837e-8068.9360S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10L_MOUSE1.837e-8069.9060S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10_MACFA3.133e-8069.9060S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10L_HUMAN1.555e-7968.9360S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_CHICK3.829e-7869.0060S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_G02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935514 ID=CK935514; Name=CK935514; organism=Citrus sinensis; type=EST; length=858bp
GGGGACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAAAACCTACCAGAGCT
TTCGCCATGGGAAGAAGACCTGCAAGGTGTTATCGCCAGATCAAAAATAA
GCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCA
GGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTC
TGTGTACACTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCT
TGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGA
AAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGT
ATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTAT
GAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTG
GACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCT
CAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAAT
CATTGTCGGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATT
TGAGGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAATGCAAAG
CTTCTTGGATGTCATGGACCCTTGGCGAGTCGCCAACCAGGAAGAGCTTT
CTTACATGCCACAGCTTAGGATTTGTCGCCTGAGCACAACTTTTTGAGAG
AATTTTCCAATTGTAGGCATTTAGTACTGTGTCAAGCACTTGTTGCAATG
CTTATGTTATCTTTATTCCATTTTTTATCGCACACTTGGATTTTTCACTT
TTAAGTTT
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