CK935514

Overview
NameCK935514
Unique NameCK935514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.429e-24
Identity = 64/167 (38.32%), Postives = 96/167 (57.49%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 557
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A+EAL  A  K P   +I+V
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.867e-24
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 536
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.158e-24
Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 536
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V     +   A  A+ RAK K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.431e-24
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVGR 563
            M  +PA  YR I    Y +  +  G+P  KI  + +G K+K  D++P  + L+  E   +   +LEA+R++ N+++ K  G++  + + +R  P  VLR NK  + AGADR+  GMR AFGK  GT ARV  G+ L +  C   ++ H +EA RRA  K     +I V R
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_PYRAB (50S ribosomal protein L10e OS=Pyrococcus abyssi GN=rpl10e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.093e-24
Identity = 64/160 (40.00%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 536
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L   +   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHVSQPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKVLSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_METBF (50S ribosomal protein L10e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.093e-24
Identity = 62/167 (37.13%), Postives = 98/167 (58.68%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 557
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++ +  GK  +++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N + A++AL  A  K P   +I++
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPIKLSLLVEEKCQIRHTALEAARITANRHLIEDTGKMGYYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNPFQKIFTVAVEKQNFVAAKKALWHAGQKLPTPCRIVI 165          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.598e-23
Identity = 66/167 (39.52%), Postives = 91/167 (54.49%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 551
            M  RP RCYR      Y +  +  GVP PKI  + +G      D   + + LV+ EK  +   ALEAAR+   K +    G D  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++  + K  +   A++A   A  K P + KI
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGVPMPKITKFTMGNVNGNYD---YELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.842e-23
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 551
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.842e-23
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 551
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CK935514 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.842e-23
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   57 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKI 551
            M  RP RCYR      Y +  +  G+P PKI  +  G       ++ + V L++ E   +   ALEA R    K + K  G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A+EAL+ A  K P R +I
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGIPQPKITKFTSGNPN---GDYDYEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
The following BLAST results are available for this feature:
BLAST of CK935514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_METAC1.429e-2438.3250S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_THEGJ1.867e-2440.0050S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_PYRKO4.158e-2440.0050S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_HALMA5.431e-2436.4750S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_PYRAB7.093e-2440.0050S ribosomal protein L10e OS=Pyrococcus abyssi GN... [more]
RL10_METBF7.093e-2437.1350S ribosomal protein L10e OS=Methanosarcina barke... [more]
RL10_SULTO4.598e-2339.5250S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_SULIY7.842e-2338.3250S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN7.842e-2338.3250S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIM7.842e-2338.3250S ribosomal protein L10e OS=Sulfolobus islandicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_G02 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935514 ID=CK935514; Name=CK935514; organism=Citrus sinensis; type=EST; length=858bp
GGGGACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAAAACCTACCAGAGCT
TTCGCCATGGGAAGAAGACCTGCAAGGTGTTATCGCCAGATCAAAAATAA
GCCGTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCA
GGATCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTC
TGTGTACACTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCT
TGAGGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGA
AAGATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGT
ATCAACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTAT
GAGGGGTGCTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTG
GACAGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCT
CAAGAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAAT
CATTGTCGGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATT
TGAGGTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAATGCAAAG
CTTCTTGGATGTCATGGACCCTTGGCGAGTCGCCAACCAGGAAGAGCTTT
CTTACATGCCACAGCTTAGGATTTGTCGCCTGAGCACAACTTTTTGAGAG
AATTTTCCAATTGTAGGCATTTAGTACTGTGTCAAGCACTTGTTGCAATG
CTTATGTTATCTTTATTCCATTTTTTATCGCACACTTGGATTTTTCACTT
TTAAGTTT
back to top