CK935527

Overview
NameCK935527
Unique NameCK935527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCMC1_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Bos taurus GN=SLC25A24 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.434e-19
Identity = 45/144 (31.25%), Postives = 73/144 (50.69%), Query Frame = 3 
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASG 632
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F     +G
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQVHGS--KSAKMN-----IYGGFQQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFVSGSMAG 299

HSP 2 Score: 46.595 bits (109), Expect = 8.434e-19
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++  F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +GII Y
Sbjct:  298 AGATAQTFIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKILKYEGMGAFYKGYVPNLLGIIPY 357
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCMC1_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Homo sapiens GN=SLC25A24 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.097e-18
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 3 
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASG 632
            FW  S G  +     +   F +   EK    +    L GG++ AVS+T+ AP++R+K+++Q      KS +++     I   F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F     +G
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKIMMQVHGS--KSDKMN-----IFGGFRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKIGTFERFISGSMAG 299

HSP 2 Score: 46.9802 bits (110), Expect = 1.097e-18
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++  F+Y ++  +TRLA        G   Q++G+ D  KK LK +G+   Y+G+  + +GII Y
Sbjct:  298 AGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKHEGLGAFYKGYVPNLLGIIPY 357
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCMC1_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Mus musculus GN=Slc25a24 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.165e-17
Identity = 43/144 (29.86%), Postives = 72/144 (50.00%), Query Frame = 3 
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASG 632
            FW  S G  +     +   F +   EK    +    L GGV+ AVS+T+ AP++R+K+++Q     +   +  + + G    F + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F     +G
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--DEKKSGQWWRQLLAGGVAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMVKEGGIRSLWRGNGTNVIKIAPETAVKFWAYEQYKKLLTEEGQKLGTFERFISGSMAG 297

HSP 2 Score: 45.0542 bits (105), Expect = 1.165e-17
Identity = 25/67 (37.31%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++  F+Y ++  +TRLA     AK G   Q++G+    KK LK +G    Y+G+  + +GII Y
Sbjct:  296 AGATAQTFIYPMEVLKTRLA----VAKTG---QYSGIYGCAKKILKHEGFGAFYKGYIPNLLGIIPY 355
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCMC1_RABIT (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Oryctolagus cuniculus GN=SLC25A24 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.969e-17
Identity = 39/144 (27.08%), Postives = 72/144 (50.00%), Query Frame = 3 
Query:  201 FWAASQGTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASG 632
            FW  S G  +     +   F +   E+    +    L GG++ AVS+T+ AP++R+K+++Q     +   +  + + G    F + +K+ G+ SLWRGN  NVI+  P  A+ F   + +K+L   +  + G ++ F     +G
Sbjct:  165 FWKHSTGIDIGDSLTIPDEFTE--EERKSGQWWRQLLAGGIAGAVSRTSTAPLDRLKVMMQ-----VHGSKSMNIFGG----FRQMIKEGGVRSLWRGNGTNVIKIAPETAVKFWVYEQYKKLLTEEGQKIGTFERFISGSMAG 297

HSP 2 Score: 45.8246 bits (107), Expect = 1.969e-17
Identity = 24/67 (35.82%), Postives = 38/67 (56.72%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++  F+Y ++  +TRLA        G   Q++G+ D  KK LK +G    Y+G+  + +GII Y
Sbjct:  296 AGATAQTFIYPMEVMKTRLA-------VGKTGQYSGIYDCAKKILKYEGFGAFYKGYVPNLLGIIPY 355
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: S2542_XENTR (Solute carrier family 25 member 42 OS=Xenopus tropicalis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.247e-16
Identity = 42/117 (35.90%), Postives = 61/117 (52.14%), Query Frame = 3 
Query:  219 GTGLALVSPVSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRL 569
            GT   L SPV      +   K+  S L   + G ++ AV+KTA AP++R K++ Q     + S R S   K       RT  +EG LSLWRGN+A ++R  P  A+ F   + +K+L
Sbjct:   16 GTHAILPSPVV-----SEGHKNHKSILNSLMSGALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSA--KEAYRLIYRTYLNEGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKL 120

HSP 2 Score: 41.5874 bits (96), Expect = 1.247e-16
Identity = 20/67 (29.85%), Postives = 36/67 (53.73%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AG ++ +  Y LD  R R+A   K         ++ +I V+ +  + +G+  LYRGF+ + +G+I Y
Sbjct:  144 AGTTATIITYPLDLVRARMAVTPK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPY 203
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.087e-16
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3 
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNLA 626
            EK    +    + GG++ AVS+T  AP++R+K+++Q            H  KG S+      + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+LA
Sbjct:  188 EKKTGQWWKQLMAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGSKGNSNIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFVAGSLA 297

HSP 2 Score: 42.743 bits (99), Expect = 2.087e-16
Identity = 22/67 (32.84%), Postives = 38/67 (56.72%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++   +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+  + +GII Y
Sbjct:  297 AGATAQTSIYPMEVLKTRLA-------VGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPY 356
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCM1A_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-A OS=Xenopus laevis GN=slc25a24-A PE=2 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 2.087e-16
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3 
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNLA 626
            EK    +    L GG++ AVS+T  AP++R+K+++Q            H  KG S+      + VK+ G+ SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+LA
Sbjct:  188 EKKTGQWWKHLLAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGTKGNSNIITGLKQMVKEGGVRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLA 297

HSP 2 Score: 42.743 bits (99), Expect = 2.087e-16
Identity = 22/67 (32.84%), Postives = 38/67 (56.72%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++   +Y ++  +TRLA        G   Q++G+ D  KK ++ +GI   Y+G+  + +GII Y
Sbjct:  297 AGATAQTSIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQKEGILAFYKGYIPNILGIIPY 356
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCMC1_XENTR (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 4.582e-16
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 3 
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFG---RTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWF-AGNLA 626
            EK    +    L GG++ AVS+T  AP++R+K+++Q            H  KG ++      + VK+ GI SLWRGN  NVI+  P  A+ F   + +K+LF  +  + G  + F AG+LA
Sbjct:  188 EKKTGQWWKQLLAGGMAGAVSRTGTAPLDRLKVMMQ-----------VHGSKGNANIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAERFIAGSLA 297

HSP 2 Score: 41.9726 bits (97), Expect = 4.582e-16
Identity = 21/67 (31.34%), Postives = 38/67 (56.72%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++   +Y ++  +TRLA        G   Q++G+ D  KK ++ +G+   Y+G+  + +GII Y
Sbjct:  297 AGATAQTSIYPMEVLKTRLA-------VGKTGQYSGMFDCAKKIMQREGVRAFYKGYIPNILGIIPY 356
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: SCMC1_DANRE (Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Danio rerio GN=slc25a24 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.955e-16
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 3 
Query:  276 EKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNF-AFKDYFKRLFNFKKDRDGYWKWFAGNLA 626
            EK+   +      GGV+ AVS+T  AP++R+K+ +Q      K+ ++S     + + F + +K+ G+ SLWRGN  NVI+  P  A+ F A++ Y K L         + ++ AG+LA
Sbjct:  189 EKTTGMWWKQLAAGGVAGAVSRTGTAPLDRMKVFMQVHSS--KTNKIS-----LVNGFKQMIKEGGVASLWRGNGVNVIKIAPETAIKFMAYEQYKKLLSKDGGKVQSHERFMAGSLA 299

HSP 2 Score: 41.9726 bits (97), Expect = 5.955e-16
Identity = 22/67 (32.84%), Postives = 39/67 (58.21%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AGA++   +Y ++  +TRL       +K G  Q++G+ D  KK L+ +G+   Y+G+  + +GII Y
Sbjct:  299 AGATAQTAIYPMEVMKTRLT-----LRKTG--QYSGMFDCAKKILRKEGVKAFYKGYVPNILGIIPY 358
[Close]
BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: S2542_XENLA (Solute carrier family 25 member 42 OS=Xenopus laevis GN=slc25a42 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.016e-15
Identity = 36/108 (33.33%), Postives = 57/108 (52.78%), Query Frame = 3 
Query:  246 VSPIFVQAPSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRL 569
            + P  + +   K+  S L     G ++ AV+KTA AP++R K++ Q     + S R S   K       RT  ++G LSLWRGN+A ++R  P  A+ F   + +K+L
Sbjct:   20 ILPTPLVSEGHKNHKSVLNSLTSGALAGAVAKTAVAPLDRTKIIFQ-----VSSNRFSA--KEAYRLIYRTYMNDGFLSLWRGNSATMVRVIPYAAIQFCAHEQYKKL 120

HSP 2 Score: 42.3578 bits (98), Expect = 1.016e-15
Identity = 21/67 (31.34%), Postives = 36/67 (53.73%), Query Frame = 2 
Query:  638 AGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            AG ++ L  Y LD  R R+A   K         ++ +I V+ +  + +G+  LYRGF+ + +G+I Y
Sbjct:  144 AGTTATLLTYPLDLVRARMAVTQK-------EMYSNIIHVFMRMSREEGLKSLYRGFTPTVLGVIPY 203
The following BLAST results are available for this feature:
BLAST of CK935527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
SCMC1_BOVIN8.434e-1931.25Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_HUMAN1.097e-1830.56Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_MOUSE1.165e-1729.86Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_RABIT1.969e-1727.08Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENTR1.247e-1635.90Solute carrier family 25 member 42 OS=Xenopus trop... [more]
SCM1B_XENLA2.087e-1634.71Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1A_XENLA2.087e-1634.71Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_XENTR4.582e-1634.71Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC1_DANRE5.955e-1633.05Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_XENLA1.016e-1533.33Solute carrier family 25 member 42 OS=Xenopus laev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004554_F09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935527 ID=CK935527; Name=CK935527; organism=Citrus sinensis; type=EST; length=838bp
GGGGACATTACGGAGGTCTCACACTAGGCGACCTTCTCAGGTCACCATCT
TCAGCTGCAAACATGGCAGATGGATCGTATCCATCCGTATTTCAGAAAAT
GCAAGGCCAGTCATACTTCATTTCTGGGGTCTCCCCCAATTTGTATGCCC
ACAACTACAGTGTGGCAGGTTCCTTTGTTAATAGAGGATCACAGAATTCT
TTTTGGGCAGCAAGTCAGGGAACTGGCCTGGCACTTGTGTCTCCTGTTTC
TCCTATATTCGTACAAGCTCCATCGGAAAAAAGTCTTTCTTCTTTTTTGG
TGGATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTTCCAAGACTGCAGCT
GCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGAT
CAAGAGTGGTCGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTG
GTAGAACTGTTAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACT
GCCAATGTTATCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAA
GGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACT
GGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGGCTGCTGGTGCTTCAT
CGCTTCTTTTTGTGTATTCGCTTGACTATGCAAGAACACGTTTGGCAAAT
GATGCTAAGGCAGCTAAAAAGGGTGGGGAAAGGCAGTTTAATGGTTTGAT
TGATGTCTACAAGAAGACTCTGAAATCTGATGGCATTGCTGGGCTCTACC
GTGGATTCAGCATCTCATGTGTTGGAATTATAGTGTAT
back to top