CK935527

Overview
NameCK935527
Unique NameCK935527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK935527 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.647e-11
Identity = 38/122 (31.15%), Postives = 57/122 (46.72%), Query Frame = 3 
Query:  270 PSEKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKK---DRDGYWKWFAGNLA 626
            P E     +    + GGV+ A+S+T  AP +R+K+ +Q      K+ +L     G+  C      + G+ S WRGN  NVI+  P  A+ F   D  KR     K   +   Y + FAG+ A
Sbjct:  237 PQELQSGVWWRHLVAGGVAGAMSRTCTAPFDRIKVYLQVNST--KTNKL-----GVVSCVHLLHAEGGLKSFWRGNGINVIKIAPESAMKFMSYDQIKRWIQEYKGGAELTTYERLFAGSSA 351

HSP 2 Score: 32.3426 bits (72), Expect = 7.647e-11
Identity = 21/68 (30.88%), Postives = 35/68 (51.47%), Query Frame = 2 
Query:  635 AAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGIIVY 838
            +AGA S   +Y ++  +TRLA      ++ G+    G+I    K    +GI   Y+G+  + +GII Y
Sbjct:  350 SAGAISQTAIYPMEVMKTRLA-----LRRTGQLD-RGMIHFAHKMYDKEGIRCFYKGYLPNLLGIIPY 411
The following BLAST results are available for this feature:
BLAST of CK935527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CMC3_CAEBR7.647e-1131.15Probable calcium-binding mitochondrial carrier CBG... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004554_F09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0004_IIIF_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK935527 ID=CK935527; Name=CK935527; organism=Citrus sinensis; type=EST; length=838bp
GGGGACATTACGGAGGTCTCACACTAGGCGACCTTCTCAGGTCACCATCT
TCAGCTGCAAACATGGCAGATGGATCGTATCCATCCGTATTTCAGAAAAT
GCAAGGCCAGTCATACTTCATTTCTGGGGTCTCCCCCAATTTGTATGCCC
ACAACTACAGTGTGGCAGGTTCCTTTGTTAATAGAGGATCACAGAATTCT
TTTTGGGCAGCAAGTCAGGGAACTGGCCTGGCACTTGTGTCTCCTGTTTC
TCCTATATTCGTACAAGCTCCATCGGAAAAAAGTCTTTCTTCTTTTTTGG
TGGATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTTCCAAGACTGCAGCT
GCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAATCAAGATGAGATGAT
CAAGAGTGGTCGGCTCTCGCATCCGTACAAGGGGATTTCTGATTGCTTTG
GTAGAACTGTTAAGGATGAAGGCATACTATCTCTTTGGAGAGGCAACACT
GCCAATGTTATCAGATACTTCCCTACCCAGGCCCTGAACTTTGCATTCAA
GGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGACAGAGATGGCTACT
GGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGGCTGCTGGTGCTTCAT
CGCTTCTTTTTGTGTATTCGCTTGACTATGCAAGAACACGTTTGGCAAAT
GATGCTAAGGCAGCTAAAAAGGGTGGGGAAAGGCAGTTTAATGGTTTGAT
TGATGTCTACAAGAAGACTCTGAAATCTGATGGCATTGCTGGGCTCTACC
GTGGATTCAGCATCTCATGTGTTGGAATTATAGTGTAT
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